View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_5 (Length: 534)
Name: NF9749_low_5
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 196 - 524
Target Start/End: Complemental strand, 4362527 - 4362195
Alignment:
| Q |
196 |
caatgcaccccttgataatttggtggtgtttcgaatgtattgacttttatattgtattgacctgaatgatgaaattttatataaacttttctcagatatt |
295 |
Q |
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| T |
4362527 |
caatgcacccctggataatttggtggtgttccgaatgtattgacttttatattgtattgacctgaatgatgaaattttatataaacttttcttagatatt |
4362428 |
T |
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| Q |
296 |
atttcttctgacgtggggtgagnnnnnnnatgaccaaattgatcgtaaaagtatagtttatgcatcttttagttgattttaataattcaatgaccaaatt |
395 |
Q |
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| T |
4362427 |
atttcttctgatgtggg-tgagtttttttatgaccaaattgattgtgaaagtatagtttacgcatcttttagttgattttaataattcaatgaccaaatt |
4362329 |
T |
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| Q |
396 |
gaagagagtgtgatagtttagagattaaattgaccgtttattctaatatgtatgtacctttttaaa-----tttgagttttgaggtctgtcctaacccta |
490 |
Q |
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| T |
4362328 |
gaagagagtgtgatagtttagggattaaattgaccgtttattctaatatgtatgtacctttttaaatattctttgagttttgaggtctgtcctaacccta |
4362229 |
T |
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| Q |
491 |
atgaacatcagagtccaactcccctaaacctttg |
524 |
Q |
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| T |
4362228 |
atgaacatcagagtccaactcacttaaacctttg |
4362195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 4362705 - 4362555
Alignment:
| Q |
18 |
gattcatatgggactgatctttatgttggacacataattaaggaaaatgatgttataatagaggttgctcttgtgtgaacattgaacacatatatcatgt |
117 |
Q |
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| T |
4362705 |
gattcatatgggactgatctttatgttggacacataattaaggaaaatgatgttataatagaggttgctcttgtgtgaacattgaacacatatatcatgt |
4362606 |
T |
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| Q |
118 |
tatgttgatgggtcatgtatatagttattaaaagcatgttgaattattagg |
168 |
Q |
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| T |
4362605 |
tatgttgatgggtcatgtatatagttattaaaagcatgttgaattattagg |
4362555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 4370508 - 4370378
Alignment:
| Q |
18 |
gattcatatgggactgatctttatgttggacacat------aattaaggaaaatgatgttataatagaggttgctcttgtgtgaacattgaacacatata |
111 |
Q |
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| T |
4370508 |
gattcatatgggactgatctttatgttggacacattaaaggaattaaggagagtgaagttataatagagattgctcttgtgtgaacattgaacacatatt |
4370409 |
T |
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| Q |
112 |
tcatgttatgttgatgggtcatgtatatagtta |
144 |
Q |
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| T |
4370408 |
tca--tcatgttgatgggtcatgtgtaaagtta |
4370378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 438
Target Start/End: Original strand, 43345171 - 43345264
Alignment:
| Q |
345 |
agtatagtttatgcatcttttagttgattttaataattcaatgaccaaattgaagagagtgtgatagtttagagattaaattgaccgtttattc |
438 |
Q |
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| T |
43345171 |
agtatagtttatggatcttttaattgattttaatagtttagagaccaaattgacgagagggttatagtttaaggattaaattgactatttattc |
43345264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 19178227 - 19178303
Alignment:
| Q |
362 |
ttttagttgattttaataattcaatgaccaaattgaagagagtgtgatagtttagagattaaattgaccgtttattc |
438 |
Q |
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| T |
19178227 |
ttttagttgattttaataattcatggacgaaataggtgatagagtgatagtttagcgattaaattgaatgtttattc |
19178303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 438
Target Start/End: Original strand, 19173191 - 19173268
Alignment:
| Q |
361 |
cttttagttgattttaataattcaatgaccaaattgaagagagtgtgatagtttagagattaaattgaccgtttattc |
438 |
Q |
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| T |
19173191 |
cttttagttaattttaatagttcatggacaaaattggtgatagagtgataatttagagattaaattgaatgtttattc |
19173268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Complemental strand, 14198248 - 14198213
Alignment:
| Q |
404 |
tgtgatagtttagagattaaattgaccgtttattct |
439 |
Q |
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| T |
14198248 |
tgtgatagtttagagattaaattgatcgtttattct |
14198213 |
T |
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