View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9749_low_8 (Length: 489)
Name: NF9749_low_8
Description: NF9749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9749_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 34905283 - 34904823
Alignment:
| Q |
18 |
gaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagatttgta |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905283 |
gaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagatttgta |
34905184 |
T |
|
| Q |
118 |
ttatctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactgag |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905183 |
t-atctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactgag |
34905085 |
T |
|
| Q |
218 |
aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34905084 |
aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctaatcctactcaaacaagtccatttggaagtg |
34904985 |
T |
|
| Q |
318 |
ccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtattcggaagcagcatatttacaccttttggcgcttcatcccagcc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
34904984 |
ccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtatttggaagcagcatattaacaccttttggcgcttcatcccagcc |
34904885 |
T |
|
| Q |
418 |
agcatttggttcgacatgcactcctgcatttggtgctactagcacccctgcgtctgcctttg |
479 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34904884 |
agaatttggttcgacatgcactcctgcatttggtgctactagcacccctgcgtctgcctttg |
34904823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 117 - 391
Target Start/End: Complemental strand, 34896461 - 34896187
Alignment:
| Q |
117 |
attatctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactga |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34896461 |
attatctaataatggtaatcattagcatcttttggcttacttttctgcctttttattgtttttatattattagattttgcagttttctaattctaactga |
34896362 |
T |
|
| Q |
217 |
gaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagt |
316 |
Q |
| |
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|| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34896361 |
gatccaacttttctcctttataggatcatcagtgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagt |
34896262 |
T |
|
| Q |
317 |
gccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagtattcggaagcagcatattt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
34896261 |
gccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccagcatttggaagcagcatattt |
34896187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 122 - 352
Target Start/End: Original strand, 28545552 - 28545778
Alignment:
| Q |
122 |
ctaataatggtaatcattggcatcttttggcttacttatctgcctttttattgtttttatattattagattttgcagttttctaattctaactgagaacc |
221 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| | ||||||||||| || || | ||||||| |||||| ||||||||||||||| || | |||| |
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| T |
28545552 |
ctaataatggtaaatattagcatcttttggcttacgtttctgccttttttttattgt---attattatattttgtagttttctaattctatctta-aacc |
28545647 |
T |
|
| Q |
222 |
aacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagtgccac |
321 |
Q |
| |
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|| ||| | | | |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
28545648 |
aagtttgttccctcccaggatcatcactctttggtcaggagcctgcttttgtaggttttggctctactcctactcaaacaagtccatgtagaagtgccat |
28545747 |
T |
|
| Q |
322 |
ccaaccatcacaaccagcatttggaagtaac |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
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|
| T |
28545748 |
ccaaccatcacgaccagcatttggaagtaac |
28545778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 34896584 - 34896486
Alignment:
| Q |
22 |
gaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagatttgtatta |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
34896584 |
gaatgtgatttctttcagctatatgcattctctattcaattttagtttacatttctttttgaagacctaaagattacgtaacaactgagatttgtatta |
34896486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 119 - 313
Target Start/End: Complemental strand, 34910251 - 34910064
Alignment:
| Q |
119 |
tatctaataatggtaatcattggcatcttttggcttacttatctgcct-ttttattgtttttatattattagattttgcagttttctaattctaactgag |
217 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||| ||||| |
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|
| T |
34910251 |
tatctaataatggtattcattagcatcttttggcttacttttctgccttttttattg--------ttattatattttgcagttttctaattctatctgag |
34910160 |
T |
|
| Q |
218 |
aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttgga |
313 |
Q |
| |
|
|||||||| | | ||| |||||| ||| ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |
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| T |
34910159 |
aaccaactctcttccttcccaggatcgtcattctttggtcaggtgcctgcttttggaggttttggctatacacctactcaaataagtccttttgga |
34910064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 119 - 353
Target Start/End: Original strand, 28543315 - 28543544
Alignment:
| Q |
119 |
tatctaataatggtaatcattggcatcttttggcttacttatctgccttttt-attgtttttatattattagattttgcagttttctaattctaactgag |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |||||| ||||||| ||||||| |||||||||||||| ||| |
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| T |
28543315 |
tatctaataatggtaatcattagcatcttttggcttagttttctcccttttttattgtt-----attattatattttgc-gttttctaattctatttgaa |
28543408 |
T |
|
| Q |
218 |
aaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaacaagtccatttggaagtg |
317 |
Q |
| |
|
|||| ||| | | ||| |||||||||| | ||| | ||| ||||| ||||||||||||||||||| | |||||||| | |||||| |||||| ||| |
|
|
| T |
28543409 |
aaccgactctcttccttcccaggatcatcatccttttgccaggagccttcttttggaggttttggctcgatgcctactcagataagtccttttggatgtg |
28543508 |
T |
|
| Q |
318 |
ccacccaaccatcacaaccagcatttggaagtaaca |
353 |
Q |
| |
|
||| |||||||||||||||| ||||||||| |||| |
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|
| T |
28543509 |
ccatacaaccatcacaaccagtatttggaagcaaca |
28543544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 34910383 - 34910281
Alignment:
| Q |
18 |
gaaggaatgtgatttctttcagctatatgtattctctattcaattttaatttacatttctttttgaagacctaaagattacatgacaactgagatttgta |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| || || |||||||| |||||| | |||||||||||||||||| || ||| ||||||||| |
|
|
| T |
34910383 |
gaaggaatgtgatttctttcagttatatgtgttctctagtcgatgctaatttacggttctttgtaaagacctaaagattacataacgactaagatttgta |
34910284 |
T |
|
| Q |
118 |
tta |
120 |
Q |
| |
|
||| |
|
|
| T |
34910283 |
tta |
34910281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 34896174 - 34896122
Alignment:
| Q |
416 |
ccagcatttggttcgacatgcactcctgcatttggtgctactagcacccctgc |
468 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
34896174 |
ccagcatttggttcgacaggaactcctgcatttggtgctacgagcacccctgc |
34896122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 34916019 - 34915983
Alignment:
| Q |
420 |
catttggttcgacatgcactcctgcatttggtgctac |
456 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34916019 |
catttggttcgacaggcactcctgcatttggtgctac |
34915983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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