View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9750_high_13 (Length: 248)
Name: NF9750_high_13
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9750_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 7903905 - 7903959
Alignment:
| Q |
169 |
ttttcttacactccaagttaattaagaagaagaataaccaatgttgtcaaaagaagat |
226 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
7903905 |
ttttcttacactccaagttaatt---aagaagagtaaccaatgttgtcaaaagaagat |
7903959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7903734 - 7903816
Alignment:
| Q |
1 |
tctctttctttttatttaatataatcttcc-ttttgactat--nnnnnnntacattattgctattatcaaacttttaatttct |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
7903734 |
tctctttctttttatttaatataatcttcctttttgactataaaaaaaaatacattattgctattatcaaacttttagtttct |
7903816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University