View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9750_high_3 (Length: 488)
Name: NF9750_high_3
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9750_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 88 - 473
Target Start/End: Original strand, 13669429 - 13669814
Alignment:
| Q |
88 |
cagttttcaagcgacgatgaagcatcaccaagagcaatactagatgcccctgtttcaggaacagagtcagacaatagtggaagcagcagtttctcctcgt |
187 |
Q |
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| T |
13669429 |
cagttttcaagcgacgatgaagcatcaccaagagcaatactagatgcccctgtttcaggaacagagtcagacaatagtggaagcagcagtttctcctcgt |
13669528 |
T |
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| Q |
188 |
actcatcggagaattcaccaccggtggagggaaaattaggttggaaggaaagtaacatgatgcaatggaaatcaatgattgatgttttcaagttcaagtc |
287 |
Q |
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| T |
13669529 |
actcatcggagaattcaccaccggtggagggaaaattaggttggaaggaaagtaacatgatgcaatggaaatcaatgattgatgttttcaagttcaagtc |
13669628 |
T |
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| Q |
288 |
agtgagaagattgacagctattccattgcttgctgctgttaacaatgatattgctaagacaggtttccctagaaaattggctaggattcgaagtgctgaa |
387 |
Q |
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| T |
13669629 |
agtgagaagattaacagctattccattgcttgctgctgttaacaatgatattgctaagacaggtttccctagaaaattggctaggattcgaagtgctgaa |
13669728 |
T |
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| Q |
388 |
gaaagtattgacattggtgctattcctactaaaccttcttggaggaattttgattatgatgaacttgctgctgctactaatgattt |
473 |
Q |
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| T |
13669729 |
gaaagtattgacattggtgctattcctactaaaccttcttggaggaattttgattatgatgaacttgctgctgctactaatgattt |
13669814 |
T |
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