View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9750_low_1 (Length: 785)
Name: NF9750_low_1
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9750_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 352 - 769
Target Start/End: Original strand, 48695200 - 48695620
Alignment:
| Q |
352 |
tttcccacaaatgtcttgatttggggcaaccacaaccaaataacctctt---cttcatctactacttcggaacaaaacacttcttcatcatcatccgatg |
448 |
Q |
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| T |
48695200 |
tttcccacaaatgtcttgatttggggcaaccacaaccaaataacctcttcttcttcatctactacttcggaacaaaacacttcttcatcatcatccgatg |
48695299 |
T |
|
| Q |
449 |
gtgataatactataaataacaacagcagagctgatgatgaaggaaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatcatc |
548 |
Q |
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| T |
48695300 |
gtgataatactataaataacaacagcagagctgatgatgaaggaaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatcatc |
48695399 |
T |
|
| Q |
549 |
atcacccttatcttcggcggaagggagattaaagtcattaaagaggcttttaagcagtagcagcagaggcataatgagcctgaatccttggagtcccact |
648 |
Q |
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| T |
48695400 |
atcacccttatcttcggcggaagggagattaaagtcattaaagaggcttttaagcagtagcagcagaggcataatgagcctgaatccttggagtcccact |
48695499 |
T |
|
| Q |
649 |
tctactgtccaacaacaaacaaagccaaaggaagcagcaggacaaagctagctggctggctagggtggaactccaatttcccaatgttttattcattcat |
748 |
Q |
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| T |
48695500 |
tctactgtccaacaacaaacaaagccaaaggaagcagcaggacaaagctagctggctggctagggtggaactccaatttcccaatgttttattcattcat |
48695599 |
T |
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| Q |
749 |
tcattattatactttttaagt |
769 |
Q |
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| T |
48695600 |
tcattattatactttttaagt |
48695620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 48694844 - 48695176
Alignment:
| Q |
5 |
ggaggagcagagacaacaattcccaatcccgaaggcgccggcgtagtggtcaagagggtggtggtcttgatccttccgtactcaactccctacccatatc |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48694844 |
ggaggagcagtgacaacaattcccaatcccgaaggcgccggcgtagtggtcaagagggtggtggtcttgatccttccgtactcaactccctacccatatc |
48694943 |
T |
|
| Q |
105 |
aatattcaattcaaaagaagatggttttgatttggagtgttcagtttgcctgtcggaagtggttgaaggagaaaaggtgagggttttgcctaaatgcaat |
204 |
Q |
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| T |
48694944 |
aatattcaattcaaaagaagatggttttgatttggagtgttcagtttgcctgtcggaagtggttgaaggagaaaaggtgagggttttgcctaaatgcaat |
48695043 |
T |
|
| Q |
205 |
cacatgtttcacatagattgcattgatatgtggttccattcccactcaacctgccctctttgcaggacaacacttgctgcaactcctcctccctcctcag |
304 |
Q |
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| T |
48695044 |
cacatgtttcacatagattgcattgatatgtggttccattcccactcaacctgccctctttgcaggacaacacttgctgcaactcctcctccctcctcag |
48695143 |
T |
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| Q |
305 |
tagtagtagtagaag---tagaatcatcaacat |
334 |
Q |
| |
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|||||||||||| || ||||||||||||||| |
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| T |
48695144 |
tagtagtagtagtagacatagaatcatcaacat |
48695176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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