View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9750_low_18 (Length: 240)
Name: NF9750_low_18
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9750_low_18 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 1865229 - 1865130
Alignment:
| Q |
141 |
gatcgtgtattgaatattgatgttatagcatgagattctaacttgctatgatatatataatgcagatgggtgatggctacaacatcacagtgaatgaatt |
240 |
Q |
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| T |
1865229 |
gatcgtgtattgaatattgatgttataacaggagattctaacttgctatggtatatataatgcagatgggtgatggctacaacatcacagtgaatgaatt |
1865130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 1869274 - 1869197
Alignment:
| Q |
163 |
ttatagcatgagattctaacttgctatgatatatataatgcagatgggtgatggctacaacatcacagtgaatgaatt |
240 |
Q |
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| T |
1869274 |
ttataacatgagattctgacttgctatgatatatataatgcagatgggtgatggctacaacatctcagtgaatgaatt |
1869197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 1865353 - 1865289
Alignment:
| Q |
18 |
taaagtgacagagactcacataagtttcagcatgaccgttag-aaaaaatgttagaaatagggtg |
81 |
Q |
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| T |
1865353 |
taaagtgacagagactcacataagtttcagcatgaccgtcagaaaaaaatgttagaaatagggtg |
1865289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 1869380 - 1869327
Alignment:
| Q |
28 |
gagactcacataagtttcagcatgaccgttagaaaaaatgttagaaatagggtg |
81 |
Q |
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| T |
1869380 |
gagacccacataagtttcaacatgacggttagaaaaaatgttagaaatagggtg |
1869327 |
T |
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