View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9750_low_19 (Length: 239)
Name: NF9750_low_19
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9750_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38856524 - 38856306
Alignment:
| Q |
1 |
atgtgagaaaaagatgcctatgaaaagctataattgtgaagatttgtgttaggtgactgttaattaatgaagagttttgggttttatggttcttgagtct |
100 |
Q |
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| T |
38856524 |
atgtgagaaaaagatgcctatgaaaagctataattgtgaagatttgtgttaggtgactgtaaat----gaagagttttgggttttatggttcttgagtct |
38856429 |
T |
|
| Q |
101 |
atatgttttgatttcatctgctgaagtactactatatgttagaagtcaatagcaaactcctctaatttcactgatttttctttccattttaagttgtact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38856428 |
atatgttttgatttcatctgctgaagtactactatatgttagaagtcaatagcaaactcctctaatttcactgatttttctttccattttaagttgtact |
38856329 |
T |
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| Q |
201 |
cctactttatgccctttcaattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38856328 |
cctactttatgccctttcaattt |
38856306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 37360440 - 37360388
Alignment:
| Q |
68 |
tgaagagttttgggttttatggttcttgagtctatatgttttgatttcatctg |
120 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
37360440 |
tgaagagttttgggttttatggttcatgaatctatatgttttgatttcatctg |
37360388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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