View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9750_low_5 (Length: 408)
Name: NF9750_low_5
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9750_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 43121446 - 43121812
Alignment:
| Q |
1 |
aaactaatcctaggttgttattataataagtggggatttggttatgacaaattttgtacagctaatgtcgttgaatttgttcttaactaattgttgagac |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43121446 |
aaactaatcctaggttgttattataataagtgaggatttggttatgacaaattttgtacagctaatgtcgttgaatttgttcttaactaattgttgagac |
43121545 |
T |
|
| Q |
101 |
aaataaagaaaacaaacaagaaatgatgcttttaacaatattgtgacagccaagttttagcttcttgaaaatagatttgatggaatcacttaattatttt |
200 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43121546 |
aaataaagaaaataaacgagaaatgatgcttttaacaatattgtgacagccaagttttagcttcttgaaaatagatttgatggaatcagttaattatttt |
43121645 |
T |
|
| Q |
201 |
agcaagaaatttcaaaattcgatgtatccttcaagnnnnnnnnnnngatattattagatgtagtatatcaatcaatataagaatttctgagacgaaatta |
300 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43121646 |
agcaagaaatttcaaaatccgatgtatccttcaa--aaaaaaaaaagatattattagatgtagtatatcaat-aatataagaatttctgagacgaaatta |
43121742 |
T |
|
| Q |
301 |
tatgttccctccgtagttgatctggatcttctgccattcttggttgcccttttttgtaaacatctcataa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43121743 |
tatgttccctccgtagttgatctggatcttctgccattcttggttgcccttttttgtaaacatctcataa |
43121812 |
T |
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