View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9750_low_6 (Length: 401)

Name: NF9750_low_6
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9750_low_6
NF9750_low_6
[»] chr2 (4 HSPs)
chr2 (123-386)||(45622861-45623111)
chr2 (1-103)||(45623235-45623335)
chr2 (1-103)||(16248453-16248552)
chr2 (1-100)||(9809470-9809569)
[»] chr8 (2 HSPs)
chr8 (1-103)||(7934999-7935101)
chr8 (1-103)||(34578582-34578684)
[»] chr4 (1 HSPs)
chr4 (1-103)||(31888776-31888875)
[»] chr7 (2 HSPs)
chr7 (56-103)||(27128904-27128951)
chr7 (1-81)||(39940055-39940136)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 123 - 386
Target Start/End: Complemental strand, 45623111 - 45622861
Alignment:
Q  123 tgggtgatgctttatacggtagtatatactatagtaaaaaataatattgacaaagctaatatacaaagctaattaattattatatattttactaccaaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  45623111 tgggtgatgctttatacggtagtatatactatagtaaaaaataatattgacaaagctaat-------------taattattatatattttactaccaaca 45623025  T
Q  223 tgaaagagcaattatgacctggctgccaccgtcctttcgttgcttcacttcgacggccctttcaccagactctggtcgcatgatgatgtagagacgctgt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45623024 tgaaagagcaattatgacctggctgccaccgtcctttcgttgcttcacttcgacggccctttcaccagactctggtcgcatgatgatgtagagacgctgt 45622925  T
Q  323 acgtcatcagcactatgagcttcttccttgttaactttgggccgatagaagaaaaatatctcac 386  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45622924 acgtcatcagcactatgagcttcttccttgttaactttggaccgatagaagaaaaatatctcac 45622861  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45623335 - 45623235
Alignment:
Q  1 gagaaagaaagcccacgaaaattgaaggaaaatatgaataggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagat 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  45623335 gagaaagaaagcccacaaaaattgaaggaaaatatgaataggatagacttttctctctcccctaattttctcttccctc--tgtgtctcaacctttagat 45623238  T
Q  101 caa 103  Q
    |||    
T  45623237 caa 45623235  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16248552 - 16248453
Alignment:
Q  1 gagaaagaaagcccacgaaaattgaaggaaaatatgaataggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagat 100  Q
    |||||| ||||||||||||||||||||||||| |||||||||| | |||||||| ||||| ||||||||||||||||||  || ||||||||||||||||    
T  16248552 gagaaataaagcccacgaaaattgaaggaaaa-atgaataggacaaacttttctctctcctctaattttctcttccctc--tgcgtctcaacctttagat 16248456  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 9809569 - 9809470
Alignment:
Q  1 gagaaagaaagcccacgaaaattgaaggaaaata-tgaataggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttaga 99  Q
    |||||||| || || ||||||||||||||||| | ||||||  | | |||||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  9809569 gagaaagagagtccccgaaaattgaaggaaaaaaatgaataatacaaacttttctctctcctctaattttctcttccctc-ttgtgtctcaacctttaga 9809471  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7934999 - 7935101
Alignment:
Q  1 gagaaagaaagcccacgaaaattgaaggaaaatatgaataggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagat 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7934999 gagaaagaaagcccacgaaaattgaaggaaaatatgtataggatagacttttctctctcccctaattttctcttccctctttgtgtctcaacctttagat 7935098  T
Q  101 caa 103  Q
    |||    
T  7935099 caa 7935101  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34578684 - 34578582
Alignment:
Q  1 gagaaagaaagcccacgaaaattgaaggaaaatatgaataggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  34578684 gagaaagaaagcccacgaaaattgaaggaaaatatgaataggatagacttttctctctcccttaattttctcttccctctttgtgtctcaacctttagat 34578585  T
Q  101 caa 103  Q
    |||    
T  34578584 caa 34578582  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31888776 - 31888875
Alignment:
Q  1 gagaaagaaagcccacgaaaattgaaggaaaatatgaataggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagat 100  Q
    |||||| ||||||||| ||||||||||||||| |||||||||| | |||||||| ||||| ||||||||||||||||||  || ||||||||||||||||    
T  31888776 gagaaataaagcccactaaaattgaaggaaaa-atgaataggacaaacttttctctctcctctaattttctcttccctc--tgcgtctcaacctttagat 31888872  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 27128904 - 27128951
Alignment:
Q  56 tctcccctaattttctcttccctctttgtgtctcaacctttagatcaa 103  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27128904 tctcctctaattttctctttcctctttgtgtctcaacctttagatcaa 27128951  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39940055 - 39940136
Alignment:
Q  1 gagaaagaaagcccacgaaaattgaaggaaaata-tgaataggatagacttttctttctcccctaattttctcttccctctt 81  Q
    |||||||| || || ||||||||||||||||| | ||||||  | | |||||| | ||||| ||||||||||||||||||||    
T  39940055 gagaaagagagtccgcgaaaattgaaggaaaaaaatgaataatacaaacttttatctctcctctaattttctcttccctctt 39940136  T

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