View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9750_low_9 (Length: 336)
Name: NF9750_low_9
Description: NF9750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9750_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 34646560 - 34646240
Alignment:
| Q |
1 |
ttattaccactctacatgtctctcctcctcacatctcttggatcaggcggcattagaccttgtgttgtacctttttcggcagaccaattcgacatgacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646560 |
ttattaccactctacatgtctctcctcctcacatctcttggatcaggcggcattagaccttgtgttgtacctttttcggcagaccaattcgacatgacaa |
34646461 |
T |
|
| Q |
101 |
aagaaggtgtagcttctaggaaatggaacctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646460 |
aagaaggtgtagcttctaggaaatggaacctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttca |
34646361 |
T |
|
| Q |
201 |
agacaatgtgggttggggttggggacttggcattccaaccattgctatgatgatatcagtaatttcatttgtgttgggctcaccattgtataagactgtg |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646360 |
agacaatgtgggttggggttggggacttgggattccaaccattgctatgatgatatcagtaatttcatttgtgttgggctcaccattgtataagactgtg |
34646261 |
T |
|
| Q |
301 |
aaacctgaaggaagtcctttg |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34646260 |
aaacctgaaggaagtcctttg |
34646240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 34666292 - 34666071
Alignment:
| Q |
28 |
ctcacatctcttggatcaggcggcattagaccttgtgttgtacctttttcggcagaccaattcgacatgacaaaagaaggtgtagcttctaggaaatgga |
127 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||| |||||||| | ||| ||||| |||||||| ||| ||||||| | ||||| ||||||| |
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| T |
34666292 |
ctcacatctcttggatcaggtggcattagatcatgtgttgtgcctttttcaggagatcaatttgacatgaccaaaaaaggtgttgaatctagaaaatgga |
34666193 |
T |
|
| Q |
128 |
acctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttggggact |
227 |
Q |
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|
|||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||| ||||||| || |||| ||||||||||| || |
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| T |
34666192 |
acctcttcaattggtactttttttgcatgggatttgcttcattaagtgctttgaccattgtggtttacattcaagatcatatgggatggggttggggtct |
34666093 |
T |
|
| Q |
228 |
tggcattccaaccattgctatg |
249 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
34666092 |
tggtattccaaccattgctatg |
34666071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 34660986 - 34660770
Alignment:
| Q |
28 |
ctcacatctcttggatcaggcggcattagaccttgtgttgtacctttttcggcagaccaattcgacatgacaaaagaaggtgtagcttctaggaaatgga |
127 |
Q |
| |
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|||| ||||||||||||||| || ||||||||||||||||| || |||| | ||| ||||| || ||| ||||| |||||||||| || || ||||||| |
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| T |
34660986 |
ctcatatctcttggatcaggtggtattagaccttgtgttgtgccatttttaggagaacaatttgatatgtcaaaaaaaggtgtagcatcaagaaaatgga |
34660887 |
T |
|
| Q |
128 |
acctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttggggact |
227 |
Q |
| |
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|| | ||||||||||| |||||| |||||||| | |||||| |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||| | |
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| T |
34660886 |
acattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattcaagacaatactggttggggttggggatt |
34660787 |
T |
|
| Q |
228 |
tggcattccaaccattg |
244 |
Q |
| |
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|||||| ||||| |||| |
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|
| T |
34660786 |
tggcataccaacaattg |
34660770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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