View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_1 (Length: 881)
Name: NF9751_high_1
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 9 - 846
Target Start/End: Original strand, 48895693 - 48896510
Alignment:
| Q |
9 |
agcagagataaaagttgcaagtcatgagcatgcagaaataggagcatggagtaaaattatactcaagtgtttgcccctgttagcagaatgggtattatga |
108 |
Q |
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| T |
48895693 |
agcagagataaaagttgcaagtcatgagcatgcagaaataggagcatggagtaaa-ttatactcaagtgtttgcccctgttagcagaatgggtattatga |
48895791 |
T |
|
| Q |
109 |
gaatgatcgtagctattaggagttgtaggaaagaaagagagaatagaaatgatggaatgttttcaaaatgcatgagttggtgaggaatttgagttctcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48895792 |
gaatgatcgtagctattaggagttgtaggaaagaaagagagaatagaaatgatggaatgttttcaaaatgcatgagttggtgaggaatttgagttctcaa |
48895891 |
T |
|
| Q |
209 |
cgagatatttctcaagataatactcacaagatagttctcttttgaacgggattcagggcataatttagtgcaactaaaattaatttgttcaagagagtct |
308 |
Q |
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| T |
48895892 |
cgagatatttctcaagataatactcacaagatagttctcttttgaacgggattcagggcataatttagtgcaactaaaattaatttgttcaagaga---- |
48895987 |
T |
|
| Q |
309 |
aatcttttgagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaacgaggaaattgatgatggaattttatcat |
408 |
Q |
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| T |
48895988 |
------------ttatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaaagaggaaattgatgatggaattttatcat |
48896075 |
T |
|
| Q |
409 |
acatgaaatttgattatgtaatgttctaaacttcaagagaattaatcttacttcnnnnnnnatggtaatggacccaacaatccaagtgacaccaatggca |
508 |
Q |
| |
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| T |
48896076 |
acatgaaatttgattatgtaatgttctaaacttcaaaagaattgatcttacttctttttttatggtaatggacccaacaatccaagtgacaccaatggca |
48896175 |
T |
|
| Q |
509 |
aaccttcatatttgaaagctttgtcaaaacagtaaagagagagtcaataaataatttatctgaaagagtttcatttgaattctaatgattgttaattttg |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
48896176 |
aaccttcatatttgaaagctttgtcaaaacagtaaagagagagtcaataaataatttatctgaaagagtttcatttgaattttaatgattgttaattttg |
48896275 |
T |
|
| Q |
609 |
ctacctgacatttcgagaaaacaatcttgagagaatgtgatggagggatcttgcaaataaagtttgtgagattggtccatcattgaataacttgagaata |
708 |
Q |
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| T |
48896276 |
ctacctgacatttcgagaaaacaatcttgagagaatgtgatggagggatcttgca---aaattttgtgagattggtccatcattgaataacttgagaata |
48896372 |
T |
|
| Q |
709 |
ttcatgaagcatttgatccatgcatacaaattcgagaaagatttatgctgaaggtagcaagaattacaaagaaacataaaaattcttcaaattcaaagac |
808 |
Q |
| |
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| T |
48896373 |
ttcatgaagcatttgatccatgcatacaaattcgagaaagatttatgctgaaggtaacaagaattacaaagaaacataaaaattcttcaaattcaaagac |
48896472 |
T |
|
| Q |
809 |
actgcgctaaacttactatgtagcaatttaaagtagtg |
846 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
48896473 |
actgagctaaacttactatgtagcaatttaaagtagtg |
48896510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 287 - 579
Target Start/End: Original strand, 16963573 - 16963862
Alignment:
| Q |
287 |
attaatttgttcaagagagtctaatcttttgagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaacgaggaa |
386 |
Q |
| |
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|||||| | |||||||||| |||||||||||||||| | ||||||||||| |||| |||||||| ||||||||||||||| || |||| | || ||| |
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| T |
16963573 |
attaatctcttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttaagacttttcattgaagaa |
16963672 |
T |
|
| Q |
387 |
attgatgatggaattttatcatacatgaaatttgattatgtaatgttctaaacttcaagagaattaatcttacttcnnnnnnnatggtaatggacccaac |
486 |
Q |
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| T |
16963673 |
actgatgatggaatttttccatacaagaaatttg---atgaaatgttgaaaacttcaagtgacttaaacctac-taatcttggaaggtagtggaccccac |
16963768 |
T |
|
| Q |
487 |
aatccaagtgacaccaatggc-aaaccttcatatttgaaagctttgtcaaaacagtaaagagagagtcaataaataatttatctgaaagagttt |
579 |
Q |
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|| |||||||| ||||||| | |||||||||| |||||||||||||||| ||||||||| | ||| |||||| | ||| | || |||||||||| |
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| T |
16963769 |
aaaccaagtgaaaccaatgacaaaaccttcatctttgaaagctttgtcacaacagtaaaaaaagaatcaatagaaaatctttcagaaagagttt |
16963862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 422
Target Start/End: Original strand, 16216327 - 16216453
Alignment:
| Q |
296 |
ttcaagagagtctaatcttttgagattatgtacacttccattaaaaacattatcagtcaaaacaagactcttgagctttttgaacgaggaaattgatgat |
395 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||||| |||| |||||||| |||||||||||||||||| ||||| | || |||| |||| || |
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|
| T |
16216327 |
ttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattgaagaaactgataat |
16216426 |
T |
|
| Q |
396 |
ggaattttatcatacatgaaatttgat |
422 |
Q |
| |
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|||||||| |||||| |||||||||| |
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| T |
16216427 |
ggaatttttccatacaagaaatttgat |
16216453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 472 - 541
Target Start/End: Original strand, 16216498 - 16216568
Alignment:
| Q |
472 |
ggtaatggacccaacaatccaagtgacaccaatggcaaa-ccttcatatttgaaagctttgtcaaaacagt |
541 |
Q |
| |
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|||| ||||||| |||| |||||| | ||||||| |||| ||||||| |||||||| |||||||||||||| |
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| T |
16216498 |
ggtagtggaccccacaaaccaagtaaaaccaatgacaaaaccttcatgtttgaaagttttgtcaaaacagt |
16216568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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