View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_11 (Length: 473)
Name: NF9751_high_11
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 44262725 - 44262304
Alignment:
| Q |
19 |
tgtaggaatgaaagcaggccatgtattctatacttatccattcgataactacttgcgaagattagagtaattctattcctatccatccgataactgaaat |
118 |
Q |
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| T |
44262725 |
tgtaggaatgaaagcaggccatgtattctatacttatccattcgataactacttgcgaagattagagtaattctattcctatccatccgataactgaaat |
44262626 |
T |
|
| Q |
119 |
gggacttaaagatacacatacatcccatcaattaatggcataacaaaccaatattcttggcacagtatatgagattggcacagtatatgagattagagta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44262625 |
gggacttaaagatacacatacatcccatcaattaatggcataacaaaccaatattcttggcacag------------------tatatgagattagagta |
44262544 |
T |
|
| Q |
219 |
tcaaatgattaagtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacactcttcaatcttcatgattgaaaattggcattaggaa |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262543 |
tcaaatgatgaagtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacactcttcaatcttcatgattgaaaattggcattaggaa |
44262444 |
T |
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| Q |
319 |
gtgattcagctcattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatctctgtggtacaatatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
44262443 |
gtgattcagctcattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatctcagtggttcaatatc |
44262344 |
T |
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| Q |
419 |
caatgatatagaaacactttaaagtctaacctctcttagc |
458 |
Q |
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| T |
44262343 |
caatgatatagaaacactttaaagtctaacctctcttagc |
44262304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 456
Target Start/End: Complemental strand, 39470460 - 39470331
Alignment:
| Q |
327 |
gctcattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatctctgtggtacaatatccaatgata |
426 |
Q |
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||||||||||||||||| | ||| |||||||||| | ||||| ||| |||| |||||||||||||||||||||||| |||||| | ||||| ||||| |
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| T |
39470460 |
gctcattgtaactggaccggaatcgaatgcaactcggctggaactgtggagaaccttgatctctctcacaagaatctcagtggtatagtatccggtgata |
39470361 |
T |
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| Q |
427 |
tagaaacactttaaagtctaacctctctta |
456 |
Q |
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|| ||| |||| ||| ||| || ||||||| |
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| T |
39470360 |
tacaaagacttcaaaatcttacttctctta |
39470331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 39470547 - 39470486
Alignment:
| Q |
219 |
tcaaatgattaagtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacac |
282 |
Q |
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| T |
39470547 |
tcaaatgatgaagtatcagctttgctttctttgaaaga--aggtcttgttgatcctttgaacac |
39470486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 30087490 - 30087567
Alignment:
| Q |
326 |
agctcattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatct |
403 |
Q |
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||||||||||||||||||| | || | |||||||||| |||| |||| |||||||| ||||||| |||| |||||| |
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| T |
30087490 |
agctcattgtaactggactggtgtccagtgcaactcagctggagctgtagagaagcttaatctctcacacatgaatct |
30087567 |
T |
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