View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9751_high_19 (Length: 350)

Name: NF9751_high_19
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9751_high_19
NF9751_high_19
[»] chr5 (27 HSPs)
chr5 (1-274)||(43387945-43388220)
chr5 (1-230)||(38640737-38640968)
chr5 (1-201)||(38640973-38641176)
chr5 (1-212)||(28445284-28445497)
chr5 (1-201)||(8739067-8739270)
chr5 (1-201)||(16429111-16429315)
chr5 (66-208)||(34530247-34530390)
chr5 (33-201)||(27494067-27494235)
chr5 (58-201)||(34530073-34530216)
chr5 (66-155)||(28445155-28445245)
chr5 (86-212)||(4650124-4650250)
chr5 (66-155)||(8738931-8739021)
chr5 (66-201)||(16429321-16429457)
chr5 (66-152)||(8973555-8973642)
chr5 (143-230)||(34440748-34440837)
chr5 (127-230)||(26319132-26319229)
chr5 (143-230)||(36359604-36359692)
chr5 (95-148)||(21070458-21070512)
chr5 (72-141)||(28083330-28083400)
chr5 (167-201)||(36359135-36359169)
chr5 (167-201)||(38641182-38641216)
chr5 (72-148)||(6156823-6156900)
chr5 (80-148)||(29862704-29862773)
chr5 (80-148)||(40613635-40613704)
chr5 (274-310)||(28445542-28445578)
chr5 (73-141)||(31929078-31929146)
chr5 (1-63)||(38692567-38692633)
[»] chr3 (16 HSPs)
chr3 (1-212)||(45244456-45244670)
chr3 (14-201)||(8735263-8735453)
chr3 (14-201)||(9087504-9087694)
chr3 (2-201)||(45244676-45244878)
chr3 (67-201)||(8735470-8735605)
chr3 (67-201)||(9087711-9087846)
chr3 (4-212)||(32025054-32025254)
chr3 (143-230)||(48304044-48304131)
chr3 (66-153)||(33842020-33842108)
chr3 (137-201)||(44085434-44085498)
chr3 (279-310)||(48303983-48304014)
chr3 (279-310)||(49096363-49096394)
chr3 (167-201)||(48304559-48304593)
chr3 (1-65)||(29048637-29048704)
chr3 (96-148)||(47979982-47980035)
chr3 (73-148)||(501094-501170)
[»] chr1 (15 HSPs)
chr1 (4-230)||(43319073-43319302)
chr1 (1-201)||(43318859-43319062)
chr1 (1-196)||(9445974-9446172)
chr1 (1-228)||(800678-800906)
chr1 (66-201)||(800538-800674)
chr1 (66-178)||(9445832-9445945)
chr1 (127-183)||(24471323-24471379)
chr1 (1-63)||(42546277-42546341)
chr1 (167-230)||(38950322-38950385)
chr1 (167-201)||(38950833-38950867)
chr1 (274-310)||(800933-800969)
chr1 (274-310)||(9446185-9446221)
chr1 (73-148)||(41584618-41584694)
chr1 (274-310)||(43319327-43319363)
chr1 (274-334)||(49677451-49677511)
[»] chr2 (11 HSPs)
chr2 (4-230)||(9847297-9847526)
chr2 (1-201)||(9847086-9847289)
chr2 (4-212)||(25715431-25715633)
chr2 (1-210)||(25715633-25715834)
chr2 (54-201)||(34519466-34519614)
chr2 (66-201)||(17766770-17766906)
chr2 (279-334)||(41855030-41855085)
chr2 (1-63)||(25217554-25217619)
chr2 (137-186)||(33367019-33367068)
chr2 (279-320)||(36874967-36875008)
chr2 (73-141)||(41203134-41203203)
[»] chr8 (17 HSPs)
chr8 (14-230)||(41530723-41530942)
chr8 (1-228)||(24627622-24627853)
chr8 (3-201)||(24627859-24628060)
chr8 (1-212)||(31234606-31234821)
chr8 (14-179)||(10833407-10833575)
chr8 (1-212)||(33472138-33472351)
chr8 (120-212)||(7970993-7971085)
chr8 (66-197)||(31234464-31234596)
chr8 (66-201)||(33472355-33472491)
chr8 (1-148)||(9845316-9845465)
chr8 (33-93)||(36403749-36403809)
chr8 (176-230)||(36404208-36404261)
chr8 (162-201)||(41530964-41531003)
chr8 (274-307)||(41530664-41530697)
chr8 (73-148)||(8885406-8885482)
chr8 (274-310)||(36404285-36404321)
chr8 (73-148)||(44106353-44106429)
[»] chr7 (11 HSPs)
chr7 (1-212)||(5731064-5731277)
chr7 (66-204)||(8214236-8214375)
chr7 (1-196)||(8214379-8214578)
chr7 (1-150)||(16278234-16278387)
chr7 (66-208)||(5730922-5731065)
chr7 (13-65)||(7115066-7115121)
chr7 (92-148)||(48776183-48776240)
chr7 (73-148)||(9151926-9152002)
chr7 (274-310)||(24042319-24042355)
chr7 (73-148)||(28230421-28230497)
chr7 (281-321)||(31985658-31985698)
[»] chr6 (6 HSPs)
chr6 (14-210)||(17501144-17501348)
chr6 (4-177)||(17500967-17501144)
chr6 (73-148)||(2539581-2539657)
chr6 (1-31)||(8120161-8120191)
chr6 (1-62)||(21514816-21514880)
chr6 (73-148)||(4508255-4508331)
[»] chr4 (17 HSPs)
chr4 (4-201)||(25140597-25140797)
chr4 (33-158)||(25140835-25140961)
chr4 (121-212)||(7794205-7794296)
chr4 (121-212)||(7817361-7817451)
chr4 (13-179)||(42660266-42660435)
chr4 (66-210)||(25140452-25140597)
chr4 (143-212)||(50392453-50392522)
chr4 (92-155)||(14474184-14474247)
chr4 (167-201)||(42660214-42660248)
chr4 (167-201)||(50391680-50391714)
chr4 (280-310)||(50392546-50392576)
chr4 (92-148)||(7931795-7931852)
chr4 (72-148)||(25752396-25752473)
chr4 (293-334)||(42660418-42660459)
chr4 (274-310)||(25752575-25752611)
chr4 (73-148)||(40703802-40703878)
chr4 (72-155)||(41323044-41323128)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-196)||(205684-205883)
scaffold0016 (1-56)||(205895-205952)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 43387945 - 43388220
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||||||| |||||||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43387945 gtctaaatgatggaattttggattttgaggacggagtcccgtaagaagtcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 43388044  T
Q  99 attaatattgtccttagaaaactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatga 198  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  43388045 attaatattgtccttaaaaaactatccatgttataaatatgttcagaattggtgttggtactgtctgaattacgtaatccggattgcatcagcaccatga 43388144  T
Q  199 aaagaatggtgtttcggaggttttcggattattttgatgtgattatcatgtaacgaaccctattttttgagatttc 274  Q
    ||| || ||||||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||| |||||||    
T  43388145 aaaaaagggtgtttaggaggttttcggattattttgatgtgattatcatgtaatgcgccctatttttttagatttc 43388220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38640968 - 38640737
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  38640968 gtctaaatgatggaattttggattttgagggcgtagtcccgtaagaagtcatttataagggagtcttgatcataaaaacacaaggacgaaagctatgaag 38640869  T
Q  99 attaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  38640868 attaatattgtccttaaattgactatccatgttataaacatgttcagaattggtgttggtgctgtccggattacgtaatccggattgcatcagcaccatg 38640769  T
Q  198 aaaagaatggtgtttcggaggttttcggattat 230  Q
    |||| || ||||||| || ||| ||||||||||    
T  38640768 aaaaaaagggtgtttagg-ggtgttcggattat 38640737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38641176 - 38640973
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    |||||||||||| |||||||||||||||||||||  ||||||||||| ||  |||||||| |||||| |||||||||||||||||| |||| ||||||||    
T  38641176 gtctaaatgataaaattttggattttgagggcagggtcccgtaagaagtctcttctaaggaagtcttgatcataaaaacacaaggatgaaaactaggaag 38641077  T
Q  99 attaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||||||| ||  |||||| |||||| ||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||| |||||    
T  38641076 attaatattgtccttaaaatgactatctatgttacaaacatgttcagaattggtgttggtgctgtccgaattatgtaatccagattgcattagccccatg 38640977  T
Q  198 aaaa 201  Q
    ||||    
T  38640976 aaaa 38640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28445284 - 28445497
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||| ||| ||||||||||||||||||||  |||  | |||||| ||| ||||||||||||||| ||| |||||||||||||| ||||||||  |||    
T  28445284 gtctaaacgatggaattttggattttgagggcggagtatcataagaagtcccttctaagggagtcttgatcttaaaaacacaaggatgaaagctacaaag 28445383  T
Q  99 attaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||||||| ||  ||||||||||||| ||| |||||||||||| ||| ||||| |||||  ||||||||||||| | |||||| | ||||||    
T  28445384 attaatattgtccttaaaatgactatccatgttacaaacatgttcagaattcgtgctggtgatgtccggattacgtaatccgaactgcatcggtaccatg 28445483  T
Q  198 aaaagaatggtgttt 212  Q
    |||| ||||||||||    
T  28445484 aaaa-aatggtgttt 28445497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 8739067 - 8739270
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 97  Q
    |||||||| ||||||||||||||||||||||    |||||||||| || | | ||||||||||||||| |||  |||| |||||||| || || ||||||    
T  8739067 gtctaaataatagaattttggattttgaggggcggagtcccgtaataagttccttctaagggagtcttgatcc-aaaagcacaaggatgagagttaggaa 8739165  T
Q  98 gattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 196  Q
    ||||||||||||||||| ||  |||| |||||||| ||| |||||||||||||||| |||||| ||    ||||||||||||| ||||||||||||||||    
T  8739166 gattaatattgtccttaaaatgactacccatgttacaaacatgttcagaattggtgctggtgcagtttggattacgtaatccgaattgcatcagcaccat 8739265  T
Q  197 gaaaa 201  Q
    |||||    
T  8739266 gaaaa 8739270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16429315 - 16429111
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 97  Q
    ||||||| |||| ||||||| ||||||||||    ||||||||||||| ||| |||||||| |||||| |||||||||| ||||||| || || || |||    
T  16429315 gtctaaacgataaaattttgaattttgaggggcggagtcccgtaagaagtcccttctaaggtagtcttgatcataaaaatacaaggatgagagttatgaa 16429216  T
Q  98 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 196  Q
    ||||| |||| || ||| ||  ||||||||||||| ||| ||||| ||||||||||||||||||||    ||||||||||||| | ||||||||||||||    
T  16429215 gattagtattatcattaaaatgactatccatgttacaaacatgtttagaattggtgttggtgctgtttggattacgtaatccgaactgcatcagcaccat 16429116  T
Q  197 gaaaa 201  Q
    |||||    
T  16429115 gaaaa 16429111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 34530390 - 34530247
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||| ||  |||| |||||||| ||| |||||||||||| ||| ||||| ||| |    
T  34530390 aatcataaaaacacaatgatgaaagttaggaagattaatattgtccttaaaatgactaaccatgttacaaacatgttcagaattagtgctggtgttgttc 34530291  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaagaatggt 208  Q
    | |||| ||||| || ||||||| ||||||||||||| ||||||    
T  34530290 agattatgtaattcgaattgcattagcaccatgaaaaaaatggt 34530247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 27494067 - 27494235
Alignment:
Q  33 agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgtta 131  Q
    ||||||||||||| ||| ||| ||||||||||| |||  |||||||||||||||   | ||||||||||||||||||||||| ||  |||||||||||||    
T  27494067 agtcccgtaagaagtccattcaaagggagtcttgatcc-aaaaacacaaggacgggggttaggaagattaatattgtccttaaaatgactatccatgtta 27494165  T
Q  132 taaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
     ||||||||| |||||||||| |||||| ||    || |||||||||| | |||||||||| ||||||||    
T  27494166 caaatatgtttagaattggtgctggtgcagtttggatcacgtaatccgaactgcatcagcatcatgaaaa 27494235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 201
Target Start/End: Complemental strand, 34530216 - 34530073
Alignment:
Q  58 ggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttgg 156  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||| ||  |||||||| | || ||| |||| || |||||||| ||     
T  34530216 ggagtcttgatcataaaaacacaaggatgaaagttaggaagattaatactgtccttaaaatgactatcca-gctacaaacatgtccaaaattggtgctga 34530118  T
Q  157 tgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    || ||||   ||||||||||||| | |||||||||||||| ||||    
T  34530117 tgatgtctggattacgtaatccgaactgcatcagcaccataaaaa 34530073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 28445155 - 28445245
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttg 155  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||| ||  || || ||||||| ||| |||||||||||||||||||    
T  28445155 aatcataaaaacacaaggatgagagttaggaagattaatattgtccttaaaacgaccatacatgttacaaacatgttcagaattggtgttg 28445245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 4650250 - 4650124
Alignment:
Q  86 gaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattg 184  Q
    ||||| |||||||||||||||||| |||| ||  ||||||||||| | ||| ||||||| ||||||||||| || | |||  ||||| ||||||  | ||    
T  4650250 gaaagataggaagattaatattgttcttacaatgactatccatgtgacaaacatgttcaaaattggtgttgatgttatccggattacttaatccaaactg 4650151  T
Q  185 catcagcaccatgaaaagaatggtgttt 212  Q
    ||||||||||||||||| ||||||||||    
T  4650150 catcagcaccatgaaaa-aatggtgttt 4650124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 8738931 - 8739021
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttg 155  Q
    ||||||||||| ||| ||| || || |||||||||||||||||| |||| ||  ||||||||||||| ||| |||||||||||||||||||    
T  8738931 aatcataaaaatacagggatgagagttaggaagattaatattgttcttaaaatgactatccatgttacaaacatgttcagaattggtgttg 8739021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 16429457 - 16429321
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    |||||||||||||||||||  | || | ||||||||||||||||||||| ||  ||||| ||||||| ||| |||||||||||||||| || ||  ||      
T  16429457 aatcataaaaacacaaggataagagtttggaagattaatattgtccttaaaacgactattcatgttacaaacatgttcagaattggtgctgatgtagttt 16429358  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
      |||| |||||||| | ||||| |||||||||||||    
T  16429357 ggattaggtaatccgaactgcattagcaccatgaaaa 16429321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 8973555 - 8973642
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtg 152  Q
    ||||||||||||||||||| || || ||||||| ||||||||||||||| ||  | ||||||||||| ||| ||||||| ||||||||    
T  8973555 aatcataaaaacacaaggatgagagttaggaaggttaatattgtccttaaaatgattatccatgttacaaacatgttcaaaattggtg 8973642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 34440837 - 34440748
Alignment:
Q  143 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg--aaaagaatggtgtttcggaggttttcggattat 230  Q
    |||||||||| |||  |||||  ||||||||||||| ||||||||||||||||||  |||| || ||||||| || ||||||||||||||    
T  34440837 agaattggtgctggcactgtctgaattacgtaatccagattgcatcagcaccatgaaaaaaaaagggtgtttagggggttttcggattat 34440748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 26319229 - 26319132
Alignment:
Q  127 tgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcgga 226  Q
    ||||| ||| ||||||||| |||||| ||||||||| |  |||||||||||||||||      |||||||| ||| || ||||||| || ||||||||||    
T  26319229 tgttacaaacatgttcagatttggtgctggtgctgtacggattacgtaatccggatt------gcaccatggaaaaaagggtgtttagggggttttcgga 26319136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 36359604 - 36359692
Alignment:
Q  143 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg-aaaagaatggtgtttcggaggttttcggattat 230  Q
    |||||||||| ||||| ||||   ||||||||||| ||||||||||| ||||||| |||| || ||||||| || ||||||| ||||||    
T  36359604 agaattggtgatggtgttgtctggattacgtaatctggattgcatcaacaccatgaaaaaaaaaggtgtttagggggttttcagattat 36359692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 21070512 - 21070458
Alignment:
Q  95 gaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaatt 148  Q
    |||||||||||||||||||| ||  |||||| |||||| ||||||||||||||||    
T  21070512 gaagattaatattgtccttaaaatgactatctatgttacaaatatgttcagaatt 21070458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 28083330 - 28083400
Alignment:
Q  72 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgtt 141  Q
    ||||||| ||||| ||||| ||| |||||||||||||||| || ||  ||||||||||||| |||||||||    
T  28083330 aaaaacagaaggatgaaagttagaaagattaatattgtccctaaaatgactatccatgttacaaatatgtt 28083400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 36359135 - 36359169
Alignment:
Q  167 attacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||||||||||| |||||||||||||||||||||    
T  36359135 attacgtaatccgaattgcatcagcaccatgaaaa 36359169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 38641216 - 38641182
Alignment:
Q  167 attacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||||||||||||||||||| |||||||||||||    
T  38641216 attacgtaatccggattgcattagcaccatgaaaa 38641182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 6156900 - 6156823
Alignment:
Q  72 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    ||||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  6156900 aaaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 6156823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 29862773 - 29862704
Alignment:
Q  80 aaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    ||||| ||||| |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  29862773 aaggatgaaagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 29862704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 40613635 - 40613704
Alignment:
Q  80 aaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    ||||| ||||| |||||||||||||| |||||||| || || ||||||||||| ||| ||||||| ||||    
T  40613635 aaggatgaaagttaggaagattaataatgtccttaaaataattatccatgttacaaacatgttcataatt 40613704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 28445542 - 28445578
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccg 310  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  28445542 cgccctattttttgagattttcggattacaaaatccg 28445578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 31929078 - 31929146
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaaaactatccatgttataaatatgtt 141  Q
    |||||| ||||| || || ||||||||||||||||||||| | |  ||||||||||||| ||| |||||    
T  31929078 aaaacagaaggatgagagttaggaagattaatattgtcctaaaatgactatccatgttacaaacatgtt 31929146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38692567 - 38692633
Alignment:
Q  1 gtctaaatgatagaattttggattttgagg---gcagtcccgtaagaact-cctttctaagggagtc 63  Q
    ||||||| ||||||||||||||||||||||   | ||||||||||||| | |||| |||||||||||    
T  38692567 gtctaaacgatagaattttggattttgaggggcggagtcccgtaagaagtcccttcctaagggagtc 38692633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 45244670 - 45244456
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||||||| ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  45244670 gtctaaatgatggaattttggattttgagggcggagtctcgtaagaagtcctttctaagggagtcttgatcataaaaacacaaggacaaaagctaggaag 45244571  T
Q  99 attaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||||||| ||  |||| |||||||| ||| |||||||||||||||| | |||||||||  |||||||||||| ||||||||||||||||||    
T  45244570 attaatattgtccttaaaatgactaaccatgttacaaacatgttcagaattggtgctcgtgctgtccggattacgtaatccagattgcatcagcaccatg 45244471  T
Q  198 aaaagaatggtgttt 212  Q
    |||| || |||||||    
T  45244470 aaaaaaagggtgttt 45244456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 8735453 - 8735263
Alignment:
Q  14 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 111  Q
    |||||||||||||||||||  |||| | |||||| | | |||||||| |||||| |||||||||||||||||| ||| |||||||| |||||||||||||    
T  8735453 aattttggattttgagggcggagtctcctaagaagttccttctaaggtagtcttgatcataaaaacacaaggatgaatgctaggaatattaatattgtcc 8735354  T
Q  112 ttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||| ||  ||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||||||    
T  8735353 ttaaaatgactatccatgttataaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgcatcaacaccatgaaaa 8735263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 9087694 - 9087504
Alignment:
Q  14 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 111  Q
    |||||||||||||||||||  |||| | |||||| | | |||||||| |||||| |||||||||||||||||| ||| |||||||| |||||||||||||    
T  9087694 aattttggattttgagggcggagtctcctaagaagttccttctaaggtagtcttgatcataaaaacacaaggatgaatgctaggaatattaatattgtcc 9087595  T
Q  112 ttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||| ||  ||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||||||    
T  9087594 ttaaaatgactatccatgttataaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgcatcaacaccatgaaaa 9087504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 45244878 - 45244676
Alignment:
Q  2 tctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaaga 99  Q
    ||||||| || |||||||||||||||||||   ||||||||||||| ||  ||||||  |||  || |||||||||||||||| | |||| |||| ||||    
T  45244878 tctaaataatggaattttggattttgagggtggagtcccgtaagaagtctcttctaaaagaggtttgatcataaaaacacaagtatgaaaactagtaaga 45244779  T
Q  100 ttaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatga 198  Q
    ||||||| ||||||| ||  |||||| |||||||||| |||||||||||||||| ||||  |||||  ||||||||||||||||||||| ||||||||||    
T  45244778 ttaatatcgtccttataatgactatcaatgttataaacatgttcagaattggtgatggtattgtccggattacgtaatccggattgcattagcaccatga 45244679  T
Q  199 aaa 201  Q
    |||    
T  45244678 aaa 45244676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 8735605 - 8735470
Alignment:
Q  67 atcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcca 165  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||||| ||  |||||| |||||| ||| ||||||| ||||||||||| || |||||     
T  8735605 atcatgaaaacacaaggatgaaagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgttcataattggtgttgatgttgtccg 8735506  T
Q  166 aattacgtaatccggattgcatcagcaccatgaaaa 201  Q
     |||||||||||| || ||||| |||||||||||||    
T  8735505 gattacgtaatccagactgcattagcaccatgaaaa 8735470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 9087846 - 9087711
Alignment:
Q  67 atcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcca 165  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||||| ||  |||||| |||||| ||| ||||||| ||||||||||| || |||||     
T  9087846 atcatgaaaacacaaggatgaaagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgttcataattggtgttgatgttgtccg 9087747  T
Q  166 aattacgtaatccggattgcatcagcaccatgaaaa 201  Q
     |||||||||||| || ||||| |||||||||||||    
T  9087746 gattacgtaatccagactgcattagcaccatgaaaa 9087711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 32025254 - 32025054
Alignment:
Q  4 taaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 101  Q
    |||| ||| |||||| ||||||||||||   |||||| |||||| ||| ||||||||||||||| ||||||||||||          ||||| |||||||    
T  32025254 taaacgatggaatttgggattttgagggtggagtcccataagaa-tcccttctaagggagtcttgatcataaaaaca----------agctatgaagatt 32025166  T
Q  102 aatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 200  Q
    ||||||||||||| ||  |||||  || ||| ||| |||||||||||||||| ||||| ||||| |||||||||||||| | |||||||| |||||||||    
T  32025165 aatattgtccttaaaacgactatttatattacaaacatgttcagaattggtgctggtgttgtccgaattacgtaatccgaactgcatcaggaccatgaaa 32025066  T
Q  201 agaatggtgttt 212  Q
    | ||||||||||    
T  32025065 aaaatggtgttt 32025054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 48304131 - 48304044
Alignment:
Q  143 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcggattat 230  Q
    |||||||||| ||||||||||   ||||||||||||||||||||||| ||||||||||| |||||||||  || ||||||||||||||    
T  48304131 agaattggtgatggtgctgtctggattacgtaatccggattgcatcaccaccatgaaaaaaatggtgttgagggggttttcggattat 48304044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 33842020 - 33842108
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgt 153  Q
    ||||||||||||||||||| || || || ||| |||||||||||||||| ||  ||||||||| ||| ||| ||||| | |||||||||    
T  33842020 aatcataaaaacacaaggatgagagttacgaacattaatattgtccttaaaatgactatccatattacaaacatgtttaaaattggtgt 33842108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 44085434 - 44085498
Alignment:
Q  137 atgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||| |||||||||| | ||| ||||   ||||||||||| |||||||||||||||||||||||    
T  44085434 atgtttagaattggtgcttgtgttgtctggattacgtaatctggattgcatcagcaccatgaaaa 44085498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 48304014 - 48303983
Alignment:
Q  279 tattttttgagatttccggattacaaaatccg 310  Q
    ||||||||||||||||||||||||||||||||    
T  48304014 tattttttgagatttccggattacaaaatccg 48303983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 310
Target Start/End: Original strand, 49096363 - 49096394
Alignment:
Q  279 tattttttgagatttccggattacaaaatccg 310  Q
    ||||||||||||||||||||||||||||||||    
T  49096363 tattttttgagatttccggattacaaaatccg 49096394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 48304593 - 48304559
Alignment:
Q  167 attacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||||||||||| |||||||||||||||||||||    
T  48304593 attacgtaatccgaattgcatcagcaccatgaaaa 48304559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29048704 - 29048637
Alignment:
Q  1 gtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtctt 65  Q
    ||||||| ||| ||||||||||||||||||   | |||||||||| || ||||||||| |||||||||    
T  29048704 gtctaaacgatggaattttggattttgaggggcggagtcccgtaataagtcctttctacgggagtctt 29048637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 47979982 - 47980035
Alignment:
Q  96 aagattaatattgtccttagaaa-actatccatgttataaatatgttcagaatt 148  Q
    ||||||||||||||||||| ||  |||||| |||||||||||||||||| ||||    
T  47979982 aagattaatattgtccttaaaatgactatctatgttataaatatgttcaaaatt 47980035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 501094 - 501170
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || ||||||||||||||||||||||| || ||  ||||||||| ||| ||| ||||| ||||||    
T  501094 aaaacagaaggatgagagctaggaagattaatattgtccataaaatgactatccattttacaaacatgtttagaatt 501170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 43319073 - 43319302
Alignment:
Q  4 taaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 101  Q
    |||||||| ||||||||||||||||||||  ||||||||||||| ||  |||||||| |||||| |||||||||||||||||| |||||||| |||||||    
T  43319073 taaatgatggaattttggattttgagggcggagtcccgtaagaagtctcttctaaggaagtcttgatcataaaaacacaaggatgaaagctatgaagatt 43319172  T
Q  102 aatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 200  Q
    |||||| |||||| ||  |||||| |||||| ||| |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  43319173 aatattatccttaaaatgactatcaatgttacaaacatgttcagaattggtgatggtgctgtccggattacgtaatccggattgcatcagcaccatgaaa 43319272  T
Q  201 agaatggtgtttcggaggttttcggattat 230  Q
    | ||  |||||| || ||||||||||||||    
T  43319273 aaaagagtgtttagggggttttcggattat 43319302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 43318859 - 43319062
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    |||||||||||  |||||||||||||||||||||  ||||||||||| ||  |||||||||| |||| |||||||||||||||||| ||||| |||||||    
T  43318859 gtctaaatgatgaaattttggattttgagggcagagtcccgtaagaagtctcttctaagggaatcttgatcataaaaacacaaggatgaaagttaggaag 43318958  T
Q  99 attaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    ||||||||||| |||| ||  |||||| |||||| ||| |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  43318959 attaatattgttcttaaaatgactatcaatgttacaaacatgttcagaattggtgctggtgttgtccagattacgtaatccggattgcatcagcaccatg 43319058  T
Q  198 aaaa 201  Q
    ||||    
T  43319059 aaaa 43319062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 9445974 - 9446172
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||| |||  |||||||||||||||||||  ||||||||||||| ||| ||||||||||||||| |||||||||| ||||||| |||||||| ||||    
T  9445974 gtctaaacgatgaaattttggattttgagggcggagtcccgtaagaaatcccttctaagggagtcttgatcataaaaatacaaggatgaaagctaagaag 9446073  T
Q  99 attaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 196  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||||||||||| |||| |||| |  ||||||||||||| | ||||||||||||||    
T  9446074 attaatattgtccttaaaatgactatccatgttataaacatgttcagaattggtgctggtactgttcggattacgtaatccgaactgcatcagcaccat 9446172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 800678 - 800906
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||| ||| ||||||||||||||| |||||||||| |||||||  ||||||| ||||    
T  800678 gtctaaacgatggaattttggattttgagggcagagtcccgtaagaagtcccttctaagggagtcttgatcataaaaatacaaggataaaagctaagaag 800777  T
Q  99 attaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    ||| |||||||||||| ||  ||||||||||||||||| |||||||||||||||| |||||| ||||   ||||||||||||||   || || ||||||     
T  800778 att-atattgtccttaaaatgactatccatgttataaacatgttcagaattggtgctggtgcagtccgcgttacgtaatccggacatcaccaacaccat- 800875  T
Q  198 aaaagaatggtgtttcggaggttttcggatt 228  Q
    |||| |||||||||| || ||| ||||||||    
T  800876 aaaaaaatggtgtttagggggtgttcggatt 800906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 800538 - 800674
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    ||||||||||||||||||| || || |||||| |||||||||||||| | ||  |||||||||| || ||| |||||  ||||||||||||||| |||||    
T  800538 aatcataaaaacacaaggatgagagttaggaaaattaatattgtcctaaaaatgactatccatgctacaaacatgttttgaattggtgttggtgttgtcc 800637  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
      ||||||||||||| | |||||||||||||| ||||    
T  800638 ggattacgtaatccgaactgcatcagcaccataaaaa 800674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 9445832 - 9445945
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    ||||||||||||||||||| || || |||||||||||| ||| |||||| ||  |||||||||| || ||| ||||| |||||||||| ||||| |||||    
T  9445832 aatcataaaaacacaaggatgagagttaggaagattaacattctccttaaaatgactatccatgctacaaagatgtttagaattggtgctggtgttgtcc 9445931  T
Q  165 aaattacgtaatcc 178  Q
      ||||||||||||    
T  9445932 ggattacgtaatcc 9445945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 24471323 - 24471379
Alignment:
Q  127 tgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggatt 183  Q
    ||||| ||| ||||||||||||| || ||||||||||| ||||||||||||||||||    
T  24471323 tgttacaaacatgttcagaattgatgctggtgctgtccgaattacgtaatccggatt 24471379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42546341 - 42546277
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtc 63  Q
    ||||||| ||| ||||||||||||||||||||  ||||||||||||| | | |||||||||||||    
T  42546341 gtctaaacgatggaattttggattttgagggcggagtcccgtaagaagttccttctaagggagtc 42546277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 38950385 - 38950322
Alignment:
Q  167 attacgtaatccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcggattat 230  Q
    ||||||||||||| ||||||||| ||||||||||| ||  |||||| ||  |||||||||||||    
T  38950385 attacgtaatccgaattgcatcaacaccatgaaaaaaagagtgtttagggagttttcggattat 38950322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 38950867 - 38950833
Alignment:
Q  167 attacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||||||||||| |||||||||||||||||||||    
T  38950867 attacgtaatccgaattgcatcagcaccatgaaaa 38950833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 800933 - 800969
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccg 310  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  800933 cgccctattttttgagattttcggattacaaaatccg 800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 9446185 - 9446221
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccg 310  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  9446185 cgccctattttttgagattttcggattacaaaatccg 9446221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 41584618 - 41584694
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  41584618 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttagaatt 41584694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 43319327 - 43319363
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccg 310  Q
    |||| |||||||| |||||||||||||||||||||||    
T  43319327 cgccatatttttttagatttccggattacaaaatccg 43319363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 49677511 - 49677451
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccgtaactcattttatcacactttaac 334  Q
    |||| ||||||||||  ||||| ||||||||||| ||| ||||||||| |||| |||||||    
T  49677511 cgccctattttttgaagtttccagattacaaaattcgttactcattttttcaccctttaac 49677451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 9847297 - 9847526
Alignment:
Q  4 taaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 101  Q
    |||||||| ||||||||||||||||||||||  ||||||||||| ||  |||||||| |||||| |||||||||||||||||| ||||  ||||||||||    
T  9847297 taaatgatggaattttggattttgagggcagagtcccgtaagaagtctcttctaaggaagtcttgatcataaaaacacaaggatgaaatttaggaagatt 9847396  T
Q  102 aatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 200  Q
    ||||||||||||| ||  |||||| | |||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  9847397 aatattgtccttaaaatgactatcgacgttacaaatatgtttagaattggtgttggtgctgtccagattacgtaatccagattgcatcagcaccatgaaa 9847496  T
Q  201 agaatggtgtttcggaggttttcggattat 230  Q
    | || ||||||| |  ||| ||||||||||    
T  9847497 aaaaaggtgtttggatggtgttcggattat 9847526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 9847086 - 9847289
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||||||| | ||||||||||||||| ||  ||||||||||||| ||  ||||||||||||||| |||||||||||||||||| ||||| || ||||    
T  9847086 gtctaaatgatgggattttggattttgagagcggagtcccgtaagaagtctcttctaagggagtcttgatcataaaaacacaaggatgaaagttatgaag 9847185  T
Q  99 attaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||||||| ||  |||||| |||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||     
T  9847186 attaatattgtccttaaaatgactatcaatgttacaaacatgttcagaattggtgttggtgttgtccagattacgtaatccggattgcatcagcaccata 9847285  T
Q  198 aaaa 201  Q
    ||||    
T  9847286 aaaa 9847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 25715633 - 25715431
Alignment:
Q  4 taaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 101  Q
    ||||||||||||||||||||||||| |||||  ||||||||||| ||  ||||| || |||||| |||||||||||||||||| |||||||| ||| |||    
T  25715633 taaatgatagaattttggattttgatggcagagtcccgtaagaagtctcttctacggaagtctttatcataaaaacacaaggatgaaagctacgaatatt 25715534  T
Q  102 aatattgtccttagaaaactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||||||||||  ||||  |       |||||| ||||| |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  25715533 aatattgtcctt--aaaatga------ctataaacatgtttagaattggtgttggtgttgtccggattacgtaatccggattgcatcagcaccatgaaaa 25715442  T
Q  202 gaatggtgttt 212  Q
     ||||||||||    
T  25715441 aaatggtgttt 25715431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 25715834 - 25715633
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||||||| ||||||||||||||||||||  |||||| |||||| ||  ||||||||||||||| ||||||||||||||||||       || ||||    
T  25715834 gtctaaatgatggaattttggattttgagggcggagtcccataagaaatctcttctaagggagtcttgatcataaaaacacaagga------ttatgaag 25715741  T
Q  99 attaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||| ||| ||  |||||| |||||| ||| ||||||||| |||||| ||     | ||  |||||||||||||||||||||| ||||||||    
T  25715740 attaatattgtctttaaaatgactatcaatgttacaaacatgttcagagttggtgctg-----ggccggattacgtaatccggattgcatctgcaccatg 25715646  T
Q  198 aaaagaatggtgt 210  Q
    |||| || |||||    
T  25715645 aaaaaaagggtgt 25715633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 34519466 - 34519614
Alignment:
Q  54 taagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtg 152  Q
    ||||||| |||| || | ||||||| ||||| ||||| ||||||||||||||||||||||| ||  | ||||||||||| ||| ||||||||||||| ||    
T  34519466 taagggaatcttgattagaaaaacataaggatgaaagttaggaagattaatattgtccttaaaatgattatccatgttacaaacatgttcagaattgatg 34519565  T
Q  153 ttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||||| ||    ||||||||||||||| | |||||||||||||||||    
T  34519566 ttggtgcagtttggattacgtaatccggactacatcagcaccatgaaaa 34519614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 17766770 - 17766906
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||| ||  |||||| |||||| ||| ||||||| ||||||||||| ||  ||      
T  17766770 aatcataaaaacacaaggatgagagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgttcaaaattggtgttgatgaagttt 17766869  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    | |||| |||||||| | ||||||| |||||| ||||    
T  17766870 agattatgtaatccgaactgcatcaacaccataaaaa 17766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 41855030 - 41855085
Alignment:
Q  279 tattttttgagatttccggattacaaaatccgtaactcattttatcacactttaac 334  Q
    ||||||||||  ||||||||||||||||||||| ||||||||| |||| |||||||    
T  41855030 tattttttgaagtttccggattacaaaatccgttactcattttttcaccctttaac 41855085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25217554 - 25217619
Alignment:
Q  1 gtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtc 63  Q
    ||||||| ||||||||||||||||||||||   | ||||||||||||| ||| ||||| |||||||    
T  25217554 gtctaaacgatagaattttggattttgaggggcggagtcccgtaagaagtcccttctatgggagtc 25217619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 33367068 - 33367019
Alignment:
Q  137 atgttcagaattggtgttggtgctgtccaaattacgtaatccggattgca 186  Q
    |||||||||||||||| ||||||| |||  |||||||||||||| |||||    
T  33367068 atgttcagaattggtgctggtgctatccggattacgtaatccggtttgca 33367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 36875008 - 36874967
Alignment:
Q  279 tattttttgagatttccggattacaaaatccgtaactcattt 320  Q
    ||||||||||  ||||||||||||||||||||| ||||||||    
T  36875008 tattttttgaagtttccggattacaaaatccgttactcattt 36874967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 41203134 - 41203203
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgtt 141  Q
    |||||| ||||| ||||| |||||||||||||||||||| || ||  ||||||||||||| ||| |||||    
T  41203134 aaaacagaaggatgaaagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtt 41203203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 41530942 - 41530723
Alignment:
Q  14 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 111  Q
    |||||||||||||||||||  ||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41530942 aattttggattttgagggcggagtcccgtaagaagtctcttctaagggagtcttgatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 41530843  T
Q  112 ttagaaa--actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtg 209  Q
    || ||||  ||||||||||||| ||| ||||||| |||||||| ||||| |||||  |||||||||||||||||||| |||||||||||||| || |||     
T  41530842 tt-gaaatgactatccatgttacaaacatgttcaaaattggtgatggtgatgtccggattacgtaatccggattgcaacagcaccatgaaaaaaagggtt 41530744  T
Q  210 tttcggaggttttcggattat 230  Q
    ||| || ||| ||| ||||||    
T  41530743 tttagggggtgttcagattat 41530723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24627853 - 24627622
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||||||||||||||||||||||||||||  ||| | ||||||| ||  ||||||||||||||| |||||||||||||||| |  ||||||||||||    
T  24627853 gtctaaatgatagaattttggattttgagggcggagttctgtaagaagtctcttctaagggagtcttgatcataaaaacacaagaat-aaagctaggaag 24627755  T
Q  99 attaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||||||| ||  ||||||||||||| ||| || ||||||||||||| ||||| |||||  |||||||||||||||||||||||||||||||    
T  24627754 attaatattgtccttaaaatgactatccatgttacaaacatattcagaattggtgctggtgttgtccggattacgtaatccggattgcatcagcaccatg 24627655  T
Q  198 --aaaagaatggtgtttcggaggttttcggatt 228  Q
      |||| |||||||||| || ||| ||||||||    
T  24627654 aaaaaaaaatggtgtttagggggtattcggatt 24627622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 24628060 - 24627859
Alignment:
Q  3 ctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagat 100  Q
    ||||||||||||||||||||||||||||||  |||| |||||||| ||  ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  24628060 ctaaatgatagaattttggattttgagggcggagtctcgtaagaagtctcttctaagggagtcttgatcataaaaacacaaggatgaaagctaggaagat 24627961  T
Q  101 taatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaa 199  Q
    |||||||||| ||| ||  |||||| |||||| ||| ||||||||||||||||||| || | ||| |||||| ||||||||| ||||| | |||||||||    
T  24627960 taatattgtcattaaaatgactatcaatgttacaaacatgttcagaattggtgttgatgttatccgaattacttaatccggactgcattaacaccatgaa 24627861  T
Q  200 aa 201  Q
    ||    
T  24627860 aa 24627859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31234606 - 31234821
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccg--taagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctagga 96  Q
    ||||||| ||| ||||||||||||||||||||  |||||||  |||||| ||| ||||||||||||||| |||||||||| ||||||| |||||||| ||    
T  31234606 gtctaaacgatggaattttggattttgagggcggagtcccgcgtaagaagtcccttctaagggagtcttgatcataaaaatacaaggatgaaagctaaga 31234705  T
Q  97 agattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcacca 195  Q
    |||||||||||||||||| ||  || ||||||||||  || |||||||||||||||| | |||||||||  ||||||||||||| | |||||||| ||||    
T  31234706 agattaatattgtccttaaaatgacgatccatgttacgaacatgttcagaattggtgctagtgctgtccggattacgtaatccgaactgcatcagtacca 31234805  T
Q  196 tgaaaagaatggtgttt 212  Q
    |||||| ||||||||||    
T  31234806 tgaaaa-aatggtgttt 31234821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 10833407 - 10833575
Alignment:
Q  14 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 111  Q
    ||||||||||||||| |||  ||||| |||| || ||| ||||||||||||||| || ||||||||| ||||| ||||| ||||||||||||||||||||    
T  10833407 aattttggattttgatggcggagtcctgtaaaaagtcccttctaagggagtcttgattataaaaacaaaaggatgaaagttaggaagattaatattgtcc 10833506  T
Q  112 ttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccg 179  Q
    ||| ||  ||||||||||||| ||| |||||||||||||||| |||||| ||||| |||| | ||||||    
T  10833507 ttaaaatgactatccatgttacaaacatgttcagaattggtgctggtgcagtccagattatgaaatccg 10833575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 33472351 - 33472138
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 97  Q
    ||||||| |||  ||||||| ||||||||||    ||||||||||||| ||  ||||||||||||||| |||  ||||||||||||| || || ||||||    
T  33472351 gtctaaacgatgaaattttgaattttgaggggcgtagtcccgtaagaagtctcttctaagggagtcttgatcc-aaaaacacaaggatgagagttaggaa 33472253  T
Q  98 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 196  Q
    ||||||||||||||||| ||  ||||||||||||| ||| ||||| |||||||||| | |||| ||    |||| ||||| || | ||||||||||||||    
T  33472252 gattaatattgtccttaaaatgactatccatgttacaaacatgttaagaattggtgcttgtgcagtttggattatgtaattcgaactgcatcagcaccat 33472153  T
Q  197 gaaaagaatggtgttt 212  Q
     |||| ||||||||||    
T  33472152 -aaaaaaatggtgttt 33472138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 7970993 - 7971085
Alignment:
Q  120 ctatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 212  Q
    |||||||||||| ||| ||||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||| ||| || |||||||    
T  7970993 ctatccatgttacaaacatgttcagaattgatgctggtgctgtccggattacgtaatccggattgcatcagcaccatggaaaaaagggtgttt 7971085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 31234464 - 31234596
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    ||||||||||||||| ||| |  || ||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||| ||||| ||| |    
T  31234464 aatcataaaaacacatggatgggagttaggaagattaatattgtccttaaaatgactatccatgttacaaatatgttcagaattggtgctggtgttgttc 31234563  T
Q  165 aaattacgtaatccggattgcatcagcaccatg 197  Q
      ||||||||||||| | ||||| | |||||||    
T  31234564 ggattacgtaatccgaactgcattaacaccatg 31234596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 33472491 - 33472355
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||| ||  ||||||||||||| ||| |||||||||||||||| || ||| ||      
T  33472491 aatcataaaaacacaaggatgatagttaggaagattaatattgtccttaaaatgactatccatgttacaaacatgttcagaattggtgatgatgcagttt 33472392  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
      |||| |||||| | | |||||||||| ||||||||    
T  33472391 ggattatgtaatctgaactgcatcagcatcatgaaaa 33472355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 9845465 - 9845316
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 97  Q
    ||||||| ||| |||||||  ||||||||||    ||||||||||||| ||||| |||||| |||||| |||  ||||| | |||||||| || ||||||    
T  9845465 gtctaaacgatggaattttaaattttgagggatggagtcccgtaagaagtcctt-ctaaggaagtcttgatcc-aaaaatataaggacgagagttaggaa 9845368  T
Q  98 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    ||||||||||||||||| ||  ||||||||||||| ||| ||||||| ||||    
T  9845367 gattaatattgtccttaaaatgactatccatgttacaaacatgttcataatt 9845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 36403749 - 36403809
Alignment:
Q  33 agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagcta 93  Q
    ||||||||||||| |||||| ||| |||||||| |||||||||||||||  ||||||||||    
T  36403749 agtcccgtaagaaatcctttataaaggagtcttgatcataaaaacacaaaaacgaaagcta 36403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 36404208 - 36404261
Alignment:
Q  176 tccggattgcatcagcaccatgaaaagaatggtgtttcggaggttttcggattat 230  Q
    |||||||||||||||||||||||||| || ||||||| ||| |||||||||||||    
T  36404208 tccggattgcatcagcaccatgaaaaaaagggtgtttagga-gttttcggattat 36404261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 41531003 - 41530964
Alignment:
Q  162 tccaaattacgtaatccggattgcatcagcaccatgaaaa 201  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  41531003 tccagattacgtaatccggattgcattagcaccatgaaaa 41530964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 41530697 - 41530664
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaat 307  Q
    |||| |||||||||||||||||||||||||||||    
T  41530697 cgccctattttttgagatttccggattacaaaat 41530664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 8885406 - 8885482
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  8885406 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 8885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 36404285 - 36404321
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccg 310  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  36404285 cgccctattttttgagattttcggattacaaaatccg 36404321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 44106429 - 44106353
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || || |||||||||||||||||||| | |||  ||||||||||||| ||| ||||| ||||||    
T  44106429 aaaacagaaggatgagagttaggaagattaatattgtccatggaatgactatccatgttacaaacatgtttagaatt 44106353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5731064 - 5731277
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaag 98  Q
    ||||||||||| |||||||||||||||||||   |||| |||||||| ||| ||||||||||||||| || ||||||| ||||||| |||||||| ||||    
T  5731064 gtctaaatgatggaattttggattttgagggtggagtctcgtaagaagtcccttctaagggagtcttgattataaaaatacaaggatgaaagctaagaag 5731163  T
Q  99 attaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatg 197  Q
    |||||||||||||||  ||  ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||  ||| ||||||||||    
T  5731164 attaatattgtccttcaaatgactatccatgttataaacatgttcagaattggtgttggtgctgtcccgattacgtaatccggacagcaccagcaccatg 5731263  T
Q  198 aaaagaatggtgttt 212  Q
    |||| ||||||||||    
T  5731264 aaaa-aatggtgttt 5731277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 8214236 - 8214375
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    |||| ||||||||||| || || || ||||||||||||||||||||||||||  ||||||||||||  ||| ||||||||||||||||||| ||| ||      
T  8214236 aatcgtaaaaacacaatgatgagagttaggaagattaatattgtccttagaatgactatccatgttgcaaacatgttcagaattggtgttgatgcagttt 8214335  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaagaa 204  Q
     |||||||||||||| | ||||| |||||| |||||||||    
T  8214336 gaattacgtaatccgaactgcattagcaccgtgaaaagaa 8214375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 8214379 - 8214578
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc---agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 97  Q
    ||||||| ||| |||||||||||| ||||||    |||| |||||||| ||| ||||||||||| ||| ||||||||||||| |||| || || ||||||    
T  8214379 gtctaaaagatggaattttggattgtgaggggcgaagtctcgtaagaagtcccttctaagggagccttgatcataaaaacacgaggatgagagttaggaa 8214478  T
Q  98 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 196  Q
    ||||||||||||||||| ||  || ||| |||||| ||| ||||||| |||| ||  |||||| ||    |||||||||| || | ||||||||||||||    
T  8214479 gattaatattgtccttaaaatgacaatcgatgttacaaacatgttcataattcgttctggtgcagtttggattacgtaattcgaactgcatcagcaccat 8214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 16278387 - 16278234
Alignment:
Q  1 gtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaa 97  Q
    ||||||| |||  ||||||||||||||| |   | ||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |  ||  | ||     
T  16278387 gtctaaacgatgaaattttggattttgatgtgcggagtcccgtaagaagtcccttctaagggagtcttgatcataaaaacacaaggatgggagtaaagat 16278288  T
Q  98 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattgg 150  Q
    ||||||||||||||||| ||  ||||||||||||| ||| || || ||||||||    
T  16278287 gattaatattgtccttaaaatgactatccatgttacaaacatattaagaattgg 16278234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 5730922 - 5731065
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    |||||||||||||||||   || || ||| ||||||||||||||  ||| ||  ||||| |||| || ||| ||||| ||||||| || ||||| |||||    
T  5730922 aatcataaaaacacaagattgagagttagaaagattaatattgtatttaaaatgactattcatgctacaaacatgtttagaattgttgctggtggtgtcc 5731021  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaagaatggt 208  Q
      ||||||||||||| | |||| || ||||||| ||| ||||||    
T  5731022 tgattacgtaatccgaactgcaacatcaccatggaaaaaatggt 5731065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 7115066 - 7115121
Alignment:
Q  13 gaattttggattttgagggcag---tcccgtaagaactcctttctaagggagtctt 65  Q
    ||||||||||||||||||| ||   ||||||||||| ||| |||||||||||||||    
T  7115066 gaattttggattttgagggaaggagtcccgtaagaagtcccttctaagggagtctt 7115121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 48776183 - 48776240
Alignment:
Q  92 taggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaatt 148  Q
    |||||||||||||||| |||||| ||  ||||||||||||||||| ||||||| ||||    
T  48776183 taggaagattaatattatccttaaaatcactatccatgttataaacatgttcaaaatt 48776240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 9152002 - 9151926
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  9152002 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 9151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 24042319 - 24042355
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccg 310  Q
    |||||||||||||||  ||||||||||||||||||||    
T  24042319 cgccttattttttgaagtttccggattacaaaatccg 24042355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 28230421 - 28230497
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  28230421 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtttagaatt 28230497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 31985658 - 31985698
Alignment:
Q  281 ttttttgagatttccggattacaaaatccgtaactcatttt 321  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  31985658 ttttttgaggttttcggattacaaaatctgtaactcatttt 31985698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 17501348 - 17501144
Alignment:
Q  14 aattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtcc 111  Q
    ||||||||||||||| |||  |||||||||| || ||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  17501348 aattttggattttgatggcggagtcccgtaaaaagtcccttctaaaggagtcttgatcataaaaacacaaggatgaaagctaggaagattaatattgtcc 17501249  T
Q  112 ttaga------aaactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaat 205  Q
    ||| |      | ||||||||||||| ||| |||||||||||||||  || ||||||||  ||||||||||||| | ||||| ||||||||||||| ||     
T  17501248 ttaaaatgactatactatccatgttacaaacatgttcagaattggtcctgatgctgtccggattacgtaatccgaactgcattagcaccatgaaaaaaag 17501149  T
Q  206 ggtgt 210  Q
    |||||    
T  17501148 ggtgt 17501144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 17501144 - 17500967
Alignment:
Q  4 taaatgatagaattttggattttgagggc--agtccc-gtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagat 100  Q
    |||||||| |||||||||||||||| |||  |||||| ||||||| ||||||||||||||| ||  |||||||||||||||||| ||||  |||||||||    
T  17501144 taaatgatggaattttggattttgatggcggagtccccgtaagaagtcctttctaagggagcctcgatcataaaaacacaaggatgaaaattaggaagat 17501045  T
Q  101 taatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatc 177  Q
    ||||| |||||||| ||  ||||| ||||||| ||| ||||||||| |||||| ||||| |||||  |||||||||||    
T  17501044 taataatgtccttaaaatgactattcatgttacaaacatgttcagatttggtgctggtgttgtccggattacgtaatc 17500967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 2539657 - 2539581
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||||||||||    
T  2539657 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgttcagaatt 2539581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8120161 - 8120191
Alignment:
Q  1 gtctaaatgatagaattttggattttgaggg 31  Q
    |||||||||||||||||||||||||||||||    
T  8120161 gtctaaatgatagaattttggattttgaggg 8120191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21514816 - 21514880
Alignment:
Q  1 gtctaaatgatagaattttggattttgagg---gcagtcccgtaagaactcctttctaagggagt 62  Q
    ||||||| ||| ||||||||||||||||||   | ||||||||||||| ||| ||||||||||||    
T  21514816 gtctaaacgatggaattttggattttgaggggcggagtcccgtaagaagtcccttctaagggagt 21514880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 4508255 - 4508331
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| ||||| |||||||||||||||||||| || ||  ||||||||| ||| ||| ||||| ||||||    
T  4508255 aaaacagaaggatgaaagttaggaagattaatattgtccctaaaatgactatccatattacaaacatgtttagaatt 4508331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 25140597 - 25140797
Alignment:
Q  4 taaatgatagaattttggattttgagggcag--tcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagatt 101  Q
    |||| ||| |||||||||||||||| ||| |  ||||| ||||| | | ||||||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  25140597 taaacgatggaattttggattttgatggcggaatcccgcaagaagttccttctaagggagtcttgatcataaaaacccaaggatgaaagctaggaagatt 25140696  T
Q  102 aatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaa 200  Q
    ||||||||||| | ||  ||||||||||||| ||| |||||||||||||||| || |||||| |  ||||||||||||| | ||||| ||||||||||||    
T  25140697 aatattgtcctcaaaatgactatccatgttacaaacatgttcagaattggtgctgatgctgttcggattacgtaatccgaactgcattagcaccatgaaa 25140796  T
Q  201 a 201  Q
    |    
T  25140797 a 25140797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 25140835 - 25140961
Alignment:
Q  33 agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgtta 131  Q
    |||| |||||||| ||| ||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||  |||||||||||||    
T  25140835 agtctcgtaagaagtcccttctaagggagtcttgatcataaaaacacaaggatcaaagctaggaagattaatattgtccttaaaatgactatccatgtta 25140934  T
Q  132 taaatatgttcagaattggtgttggtg 158  Q
     ||| ||||||| ||||| || |||||    
T  25140935 caaacatgttcaaaattgatgctggtg 25140961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 7794205 - 7794296
Alignment:
Q  121 tatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 212  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||  ||| |||||||||||||| ||||||||||    
T  7794205 tatccatgttataaatatgttcaaaattggtgttggtgttgtccgaattacgtaatctggacagcaccagcaccatgaaaaaaatggtgttt 7794296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 7817361 - 7817451
Alignment:
Q  121 tatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||   || |||||||||||||| ||||||||||    
T  7817361 tatccatgttataaacatgttcagaattggtgttggtgctgtccagattacgtaatctggacatcaccagcaccatgaaaa-aatggtgttt 7817451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 42660266 - 42660435
Alignment:
Q  13 gaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaaacacaaggacgaaagctaggaagattaatattgtc 110  Q
    |||||||||||||||||||   |||| | |||||| ||  || ||| |||||||| |||||||||| |||| || |||||||||||||||||||||||||    
T  42660266 gaattttggattttgagggtggagtctcataagaagtctcttttaaaggagtcttgatcataaaaatacaatgatgaaagctaggaagattaatattgtc 42660365  T
Q  111 cttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccg 179  Q
    |||| ||  |||||| || ||| ||| ||| |||||||||||| ||||||| |||  ||||| |||||||    
T  42660366 cttaaaatgactatcaatattacaaacatgctcagaattggtgctggtgctatccggattacataatccg 42660435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 210
Target Start/End: Original strand, 25140452 - 25140597
Alignment:
Q  66 aatcataaaaacacaaggacgaaagctaggaagattaatattgtccttagaaa-actatccatgttataaatatgttcagaattggtgttggtgctgtcc 164  Q
    ||||||||||| | ||||| || || |||||||||||||||||| |||| ||  | ||| ||||||| ||| ||||||||||||||||||| |||| | |    
T  25140452 aatcataaaaagataaggatgagagttaggaagattaatattgttcttaaaatgattatacatgttacaaacatgttcagaattggtgttgatgctattc 25140551  T
Q  165 aaattacgtaatccggattgcatcagcaccatgaaaagaatggtgt 210  Q
     |||||||||||||| | ||||| |||||| |||||| || |||||    
T  25140552 gaattacgtaatccgaactgcattagcaccgtgaaaaaaagggtgt 25140597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 50392453 - 50392522
Alignment:
Q  143 agaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccatgaaaagaatggtgttt 212  Q
    |||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||| || |||||||    
T  50392453 agaattggtgatggtgctgtctggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgttt 50392522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 14474184 - 14474247
Alignment:
Q  92 taggaagattaatattgtccttagaaaactatccatgttataaatatgttcagaattggtgttg 155  Q
    |||||||||||||||||| |||| |  ||||||||||||| ||| ||||||| |||| ||||||    
T  14474184 taggaagattaatattgttcttaaacgactatccatgttacaaacatgttcaaaatttgtgttg 14474247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 42660214 - 42660248
Alignment:
Q  167 attacgtaatccggattgcatcagcaccatgaaaa 201  Q
    ||||||||||||||||||||| |||||||||||||    
T  42660214 attacgtaatccggattgcattagcaccatgaaaa 42660248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 50391680 - 50391714
Alignment:
Q  167 attacgtaatccggattgcatcagcaccatgaaaa 201  Q
    |||||||| ||||||||||||||||||||||||||    
T  50391680 attacgtattccggattgcatcagcaccatgaaaa 50391714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 50392546 - 50392576
Alignment:
Q  280 attttttgagatttccggattacaaaatccg 310  Q
    |||||||||||||||||||||||||||||||    
T  50392546 attttttgagatttccggattacaaaatccg 50392576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 7931852 - 7931795
Alignment:
Q  92 taggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||||||||||||||||| || || |||||||||||||| ||| ||||| ||||||    
T  7931852 taggaagattaatattgtccctaaaataactatccatgttacaaacatgtttagaatt 7931795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 25752396 - 25752473
Alignment:
Q  72 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    ||||||| || || || ||||||||||||| |||||||||||| ||  ||||||||||||| ||| ||||| ||||||    
T  25752396 aaaaacataaagatgagagctaggaagattgatattgtccttaaaatgactatccatgttacaaacatgtttagaatt 25752473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 42660418 - 42660459
Alignment:
Q  293 tccggattacaaaatccgtaactcattttatcacactttaac 334  Q
    ||||||||||| ||||||||||||||||| |||| |||||||    
T  42660418 tccggattacataatccgtaactcattttttcaccctttaac 42660459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 25752575 - 25752611
Alignment:
Q  274 cgccttattttttgagatttccggattacaaaatccg 310  Q
    |||| |||||||||| |||||||||||||||||||||    
T  25752575 cgccctattttttgaaatttccggattacaaaatccg 25752611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 40703878 - 40703802
Alignment:
Q  73 aaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaatt 148  Q
    |||||| ||||| || || |||||||||||||||||||| || ||  ||||||||||||| ||| ||||| ||||||    
T  40703878 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtttagaatt 40703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 41323044 - 41323128
Alignment:
Q  72 aaaaacacaaggacgaaagctaggaagattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttg 155  Q
    ||||||| ||||| || || |||||||||||||||||||| || ||  | ||||||||||| ||| ||||| |||||| ||||||    
T  41323044 aaaaacaaaaggatgagagttaggaagattaatattgtccataaaatgattatccatgttacaaacatgtttagaatttgtgttg 41323128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 205684 - 205883
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaagggagtcttaatcataaaa-acacaaggacgaaagctaggaa 97  Q
    |||||||||||  ||||||||||||||||||   ||||||||||||| ||  ||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  205684 gtctaaatgatgaaattttggattttgagggtggagtcccgtaagaagtctcttctaagggagtcttgatcataaaaaacacaaggatgaaagctaggaa 205783  T
Q  98 gattaatattgtccttagaa-aactatccatgttataaatatgttcagaattggtgttggtgctgtccaaattacgtaatccggattgcatcagcaccat 196  Q
    |||||||||| |||||| ||  |||| | |||||| ||| |||||||||||||||| ||||| ||||   ||||||||||||||||||||| | ||||||    
T  205784 gattaatattatccttaaaatgactaccaatgttacaaacatgttcagaattggtgctggtgatgtctggattacgtaatccggattgcattaacaccat 205883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 205895 - 205952
Alignment:
Q  1 gtctaaatgatagaattttggattttgagggc--agtcccgtaagaactcctttctaa 56  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||    
T  205895 gtctaaatgatggaattttggattttgagggcggagtcccgtaagaagtcctttctaa 205952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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