View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_2 (Length: 678)
Name: NF9751_high_2
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 635; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Complemental strand, 47467485 - 47466839
Alignment:
| Q |
19 |
actaatcaatctgttatgacaaattcactacatgaaattatttgaaatttttgaaacctcaattatgattccttttgttgttgcaaatatgactttgcaa |
118 |
Q |
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| T |
47467485 |
actaatcaatctgttatgacaaattcactacatgaaattatttgaaatttttgaaacctcaattatgattccttttgttgttgcaaatatgactttgcag |
47467386 |
T |
|
| Q |
119 |
cctgtcatgtgttgtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagtgaaactcaacaaaaatgatttgaaggagattgaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47467385 |
actgtcatgtgttgtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagtgaaactcaacaaaaatgatttgaaggagattgaa |
47467286 |
T |
|
| Q |
219 |
gatgctgtgccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttg |
318 |
Q |
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| T |
47467285 |
gatgctgtgccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttg |
47467186 |
T |
|
| Q |
319 |
atgccagttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaaccgattgttatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47467185 |
atgccagttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaaccgattgtcatt |
47467086 |
T |
|
| Q |
419 |
ggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttataattaatgtgaaatcatgt |
518 |
Q |
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| T |
47467085 |
ggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttataattaatgtgaaatcatgt |
47466986 |
T |
|
| Q |
519 |
tctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaaataaactagggctaggttaa |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47466985 |
tctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaaataaactagggctaggttaa |
47466886 |
T |
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| Q |
619 |
tttatacatccacattcacaatcatacgcatatcagtttccacaggt |
665 |
Q |
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| T |
47466885 |
tttatacatccacattcacaatcatacgcatatcagtttccacaggt |
47466839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 224 - 564
Target Start/End: Original strand, 47227346 - 47227679
Alignment:
| Q |
224 |
tgtgccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttgatgcc |
323 |
Q |
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| T |
47227346 |
tgtgccaatatctgaggtgtcaggggatcggacaactgatggttttgttcattgttcatggaagtttgctaatacttcaacaaaagcataccttgatgcc |
47227445 |
T |
|
| Q |
324 |
agttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccata-taataaaaccgattgttattggtc |
422 |
Q |
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| T |
47227446 |
ag-tttgtacctc--tgtttgagattcaaactagtttctggtctctttgca---taactcaaagttaatcccatacgaataaaactgattgttattggtt |
47227539 |
T |
|
| Q |
423 |
gaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttataattaatgtgaaatcatgttcta |
522 |
Q |
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|||| || ||| |||||| ||||||||||| |||||||| || | | ||||||| ||||||||||| |||||||| |||||| ||| |||||||||| | |
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| T |
47227540 |
gaatacgtatagctcagccaaatttgtgttccatgcttaattatatacatgttacatgattaaaccagtttgcttaaaattaacgtgcaatcatgttcca |
47227639 |
T |
|
| Q |
523 |
ctaatatattccttgtctggagagagatgtgaaattgtgatt |
564 |
Q |
| |
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||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
47227640 |
ctaatattttcattgtctg--gagagatgtgaaattgtgatt |
47227679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 47227254 - 47227340
Alignment:
| Q |
82 |
tatgattccttttgttgttgcaaatatgactttgc---aacctgtcatgtgttgtaggaacaactaagataaaaaatcttgaaagtaa |
166 |
Q |
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| T |
47227254 |
tatgattccttt-gttgttgcaagtatgacatttctataacctctcatgtgttgtatgaacaacgaagataaagaatcttgaaagtaa |
47227340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 9e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 400 - 603
Target Start/End: Complemental strand, 28831076 - 28830879
Alignment:
| Q |
400 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttat |
499 |
Q |
| |
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||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| |||||| | |
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| T |
28831076 |
aataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgcttaattatgtacatgttatgtgattaaaccagtttgct--t |
28830979 |
T |
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| Q |
500 |
aattaatgtgaaatcatgttctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaaa |
599 |
Q |
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| T |
28830978 |
aattaatatgaaatcatgttccactaatattttctttatccg--gagagatgcgaaattgtga-catttttc-ctctgcctgttgttttaagtttcaaaa |
28830883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 271 - 360
Target Start/End: Complemental strand, 46923195 - 46923105
Alignment:
| Q |
271 |
ttcaatgttcttggaagtttgctaatactcc-aacaaaatcatagcttgatgccagttttgtacctcagtgtttgagactcaaactagttt |
360 |
Q |
| |
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|||||||||| ||||||||| |||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46923195 |
ttcaatgttcatggaagttttctaatactcccaacaaaagcatagctcgatgccaattttgtacctcagtgtttgagactcaaactagttt |
46923105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 46923015 - 46922960
Alignment:
| Q |
400 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgctta |
461 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
46923015 |
aataaaaccgattgttaatggtcg------gataactcagcaaaatttgtgtttcatgctta |
46922960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 1466217 - 1466313
Alignment:
| Q |
499 |
taattaatgtgaaatcatgttctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaa |
598 |
Q |
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|||||||| ||||||||| ||| |||||||| ||| ||||| ||||||| || |||||||| | ||||||| ||||||||||||||| || ||||||| |
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| T |
1466217 |
taattaatatgaaatcatattccactaatattttctttgtccggagaga--tgcgaaattgtaac-atttttc-ctctgcctgttgttctaagttttaaa |
1466312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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