View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_21 (Length: 341)
Name: NF9751_high_21
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 35940316 - 35940605
Alignment:
| Q |
1 |
tcttttgtgtgccttctccatcaactcattcctgaggatgctaaatccatggaaacctttgattcactcactgttttcacagcaaaggtaaatcacatgt |
100 |
Q |
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| T |
35940316 |
tcttttgtgtgccttctccatcaactcattcccgaggatgctaaatccatggaaacctttgattcactcactgttttcacagcaaaggtaaatcacatgt |
35940415 |
T |
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| Q |
101 |
tatctcagatcgaataaagatcatagtgatcactaaagaagcaataagagtattcatgtggaagattaataattaaagaacgagataatagtacaacaga |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||| |
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| T |
35940416 |
tatctccgatcgaataaagatcatagtgatcactaaagaagcaataagagtattcatgtaggagattaata---aaagaacgagataatagtacaataga |
35940512 |
T |
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| Q |
201 |
gaaagtaatttataaagagttaattggtctagctaacttaaactaggtatcaattaacagtagttgattcactttggtgtagtggttataagc |
293 |
Q |
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| T |
35940513 |
gaaagtaatttataaagagtgagttggtctaactaactctaactacctatcaactaactctagttgattcactttaatgtaatgattataagc |
35940605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 35940657 - 35940689
Alignment:
| Q |
309 |
tcatacttagtaaaaaatcatttaagtgcaaat |
341 |
Q |
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| T |
35940657 |
tcatacttattaaaaaatcatttaagtgcaaat |
35940689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 32181583 - 32181660
Alignment:
| Q |
13 |
cttctccatcaactcattcctgaggatgctaaatccatggaaacctttgattcactcactgttttcacagcaaaggta |
90 |
Q |
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||||||||||| |||||||| | |||| ||||| ||||||||||||||||| |||||||| |||||||| |||||| |
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| T |
32181583 |
cttctccatcatctcattccccaacatgccaaatcgatggaaacctttgattctctcactgtcttcacagccaaggta |
32181660 |
T |
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