View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_22 (Length: 330)
Name: NF9751_high_22
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 3054442 - 3054755
Alignment:
| Q |
1 |
aagcaacaattccaaaactatacatgtcagattctttactagcccttcctccattgatatattcaggtgctaaataaccatatgttccgactacatctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054442 |
aagcaacaattccaaaactatacatgtcagattctttactagcccttcctccattgatatattcaggtgctaaataaccatatgttccgactacatctgt |
3054541 |
T |
|
| Q |
101 |
tctttgagtcctcaacattggatcaactagtttcgccatcccgaaatcaccgagttttgtgctgaaatcagtgtccagcaacacattagctgacttaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054542 |
tctttgagtcctcaacattggatcaactagtttcgccatcccgaaatcaccgagttttgtgctgaaatcagtgtccagcaacacattagctgacttaata |
3054641 |
T |
|
| Q |
201 |
tcccgatgaagaacacattgctcagcatcgtcatgaaggtaacgaagcgcgttcgccacacctaatgcaaccttgtaccttacttcccaagccaaacttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054642 |
tcccgatgaagaacacattgctcagcatcgtcatgaaggtaacgaagcgcgttcgcgacacctaatgcaaccttgtaccttacttcccaagccaaacttt |
3054741 |
T |
|
| Q |
301 |
tcttgtcaccaaac |
314 |
Q |
| |
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|||||||||||||| |
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| T |
3054742 |
tcttgtcaccaaac |
3054755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36939524 - 36939475
Alignment:
| Q |
1 |
aagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
50 |
Q |
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|||||||||| ||||||||||||| ||| | |||||||||||| |||||| |
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| T |
36939524 |
aagcaacaataccaaaactatacacgtctgtttctttactagctcttcct |
36939475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36941594 - 36941643
Alignment:
| Q |
1 |
aagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
50 |
Q |
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|||||||||||||||||||||||| || | ||||||||| ||||||||| |
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| T |
36941594 |
aagcaacaattccaaaactatacacatcggtttctttactggcccttcct |
36941643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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