View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_30 (Length: 288)
Name: NF9751_high_30
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 42834693 - 42834411
Alignment:
| Q |
1 |
ctactttccaggtgattttcatcttatgtcgatccctcgtctgcttttgtgctctaaggagatatttttcatgctaagttctaaagttggagttttcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834693 |
ctactttccaggtgattttcatcttatgtcgatccctcgtctgcttttgtgctctaaggagatatttttcatgctaagttctaaagttggagttttcttg |
42834594 |
T |
|
| Q |
101 |
cagactagaggcatgcacactcttattcgtgataaggaaatatcgaagcatgactttgttttttattcagatcgactaattcgtttggtaggtaatgcct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834593 |
cagactagaggcatgcacactcttattcgtgataaggaaatatcgaagcatgactttgttttttattcagatcgactaattcgtttggtaggtaatgcct |
42834494 |
T |
|
| Q |
201 |
tatacaagatatcatgatttacagtccccgctaacaaactaatattattatcactggacttcacaggtagtcgaacatggtct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42834493 |
tatacaagatatcatgatttacagtccccgctaacaaactaatattattatcactggacttcacaggtagtcgaacatggtct |
42834411 |
T |
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