View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_35 (Length: 258)
Name: NF9751_high_35
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9821098 - 9820856
Alignment:
| Q |
1 |
gacgaagggattagtttgcaattttgacattgttagattttttaagtgtgagtagttaagtctcaattacttttaaatgagtaaaatattggatatataa |
100 |
Q |
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| T |
9821098 |
gacgaagggattagtttacaattttgacatttttagatttt--aagtgtgagtagttaagtcttagttacttttaaatgagtaaaatattggatatataa |
9821001 |
T |
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| Q |
101 |
gatatttgatcaatacttaatgccttaaggnnnnnnnnnnggagatcgatgtggtgtctccctctcttgcagtcttgaatcattggttctttgttgctca |
200 |
Q |
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| T |
9821000 |
gatatttggtcaatacttaatgccttaagtttttttttttttttggagatgtggtgtctccctctcttgtagtcttgaatcattggttctttgttgctca |
9820901 |
T |
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| Q |
201 |
cgactt-tccaaactcctcaacaaatggcatcagagtcttggttt |
244 |
Q |
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| T |
9820900 |
cgacttccccaaactcctcaacaaatggtatcagagtcttggttt |
9820856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 10723023 - 10722781
Alignment:
| Q |
1 |
gacgaagggattagtttgcaattttgacattgttagattttttaagtgtgagtagttaagtctcaattacttttaaatgagtaaaatattggatatataa |
100 |
Q |
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| T |
10723023 |
gacgaagggattagtttacaattttgacatttttagatttt--aagtgtgagtagttaagtcttagttacttttaaatgagtaaaatattggatatataa |
10722926 |
T |
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| Q |
101 |
gatatttgatcaatacttaatgccttaaggnnnnnnnnnnggagatcgatgtggtgtctccctctcttgcagtcttgaatcattggttctttgttgctca |
200 |
Q |
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| T |
10722925 |
gatatttggtcaatacttaatgccttaagtttttttttttttttggagatgtggtgtctccctctcttgtagtcttgaatcattggttctttgttgctca |
10722826 |
T |
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| Q |
201 |
cgactt-tccaaactcctcaacaaatggcatcagagtcttggttt |
244 |
Q |
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| T |
10722825 |
cgacttccccaaactcctcaacaaatggtatcagagtcttggttt |
10722781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 1418095 - 1418061
Alignment:
| Q |
76 |
aatgagtaaaatattggatatataagatatttgat |
110 |
Q |
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| T |
1418095 |
aatgagtaaaatattggatatataagatatttgat |
1418061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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