View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_36 (Length: 257)
Name: NF9751_high_36
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 26309772 - 26310019
Alignment:
| Q |
1 |
aaagtatattatcattgaagtgctcgaagggtataggtaacagacacaataaaagtaaagacttatcctcttcctcaatattcaccaaatgatcaactat |
100 |
Q |
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| T |
26309772 |
aaagtatattatcattgaagtgctcgaatggtataggtaacagacacaataaaagtaaagacttatcctcttcctcaatattcaccaaatgatcaactat |
26309871 |
T |
|
| Q |
101 |
attttaaactccattagtttctccgcaatatattgagtccaccatcctaaatgaataaagttattgtttcaagaattgagacaataaacttagtcatata |
200 |
Q |
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| T |
26309872 |
attttaaactccattggtttctctgcaatatattgagtccaccatcctaaatgaatggagttattgtttcaagaattgagataataaacttagtcatata |
26309971 |
T |
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| Q |
201 |
caatgaatccaacttggttcacattgacgtcatgttcttctcctttgc |
248 |
Q |
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| T |
26309972 |
cagtgaatccaacttggttcacattgacgtcatgttcttctcctttgc |
26310019 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 32429288 - 32429328
Alignment:
| Q |
138 |
tccaccatcctaaatgaataaagttattgtttcaagaattg |
178 |
Q |
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| T |
32429288 |
tccaccatcctaaatgagtagagttgttgtttcaagaattg |
32429328 |
T |
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