View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_high_39 (Length: 248)
Name: NF9751_high_39
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37639033 - 37638812
Alignment:
| Q |
1 |
ccttaccgtaaaatatttttaaggccgatttaaattatttaaaagtagataaaatagactatttaataaatttaatacgaatctttcnnnnnnnnnnnnn |
100 |
Q |
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| T |
37639033 |
ccttaccgtaaaatatttttaaggccgatttaaattatttaaaagtagataaaatagactatttaataaatttaatatgaatctttcaaaaaaata---- |
37638938 |
T |
|
| Q |
101 |
gaaataataa-taatatgaagtaagcttgtaaataagctttcagaccaagtcgacttttaaatagctcggaccaaaaaattaggtttacgaaaagccatt |
199 |
Q |
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|||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37638937 |
-aaataaaaaataatatgaagtaagcttgtaaataagctttcaaatcaagtcgacttttaaatagctcggatcaaaaaattaggtttacgaaaagccatt |
37638839 |
T |
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| Q |
200 |
agacgagactcatacttacaaatgttt |
226 |
Q |
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|| |||||||||||||| ||||||||| |
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| T |
37638838 |
aggcgagactcatacttgcaaatgttt |
37638812 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 44523384 - 44523444
Alignment:
| Q |
17 |
ttttaaggccgatttaaattatttaaaagtagataaaatagactatttaataaatttaata |
77 |
Q |
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| T |
44523384 |
ttttaaggccgatttaacctatttaaaagtagataaaatgaactatttaataactttaata |
44523444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 41850880 - 41850820
Alignment:
| Q |
17 |
ttttaaggccgatttaaattatttaaaagtagataaaatagactatttaataaatttaata |
77 |
Q |
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| T |
41850880 |
ttttaaggctgatttagcttatttaaaagtagataaaattgactatttaattattttaata |
41850820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 43853506 - 43853565
Alignment:
| Q |
18 |
tttaaggccgatttaaattatttaaaagtagataaaatagactatttaataaatttaata |
77 |
Q |
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||||||| |||||||| ||||||||||||| ||||||||| || ||||||| ||||||| |
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| T |
43853506 |
tttaaggtcgatttaacatatttaaaagtagttaaaatagattagttaataactttaata |
43853565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 43854461 - 43854520
Alignment:
| Q |
18 |
tttaaggccgatttaaattatttaaaagtagataaaatagactatttaataaatttaata |
77 |
Q |
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||||||| |||||||| ||||||||||||| ||||||||| || ||||||| ||||||| |
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| T |
43854461 |
tttaaggtcgatttaacatatttaaaagtagttaaaatagattagttaataactttaata |
43854520 |
T |
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