View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9751_low_10 (Length: 518)
Name: NF9751_low_10
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_10 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 36)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Original strand, 5096819 - 5097306
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5096819 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
5096918 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5096919 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccatgaactattatcgatttccaagtaccttcc |
5097018 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagggg |
317 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5097019 |
aagtcttcgaagtctttgggtggagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagggg |
5097118 |
T |
|
| Q |
318 |
tttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5097119 |
tttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaa |
5097218 |
T |
|
| Q |
418 |
cgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtcttatctatctctctttgccccccttgtatgtttgtct |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5097219 |
cgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtcttatctatctctcttttccccccttgtatgtttgtct |
5097306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 5128387 - 5127939
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| || ||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5128387 |
aaaagcattggatatatctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttggatgtcaccaacaaatgatctcc |
5128288 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||| |||||| || ||||||||||| |||||||||||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
5128287 |
cacccctatttcaaacatctaatatcatgtcatctcttgttcctctagatgtaccacatagtagttcccacgaactatcgtcgatgtcccagtaccttcc |
5128188 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagggg |
317 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
5128187 |
aagtcttcgaagtctttggatggagtgcagctcagaacttcaactttctcatgatgcagcaataattttggatgccttgtatgccacaaattataaggag |
5128088 |
T |
|
| Q |
318 |
tttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaa |
417 |
Q |
| |
|
|| ||| || ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||| |||| |
|
|
| T |
5128087 |
ttggaacaaactgcaagtacatcacaagtatcaattatgactacttctacatcacaagtatcaaaacattcctcgaagtcgctattaattcaaattggaa |
5127988 |
T |
|
| Q |
418 |
cgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg |
466 |
Q |
| |
|
||||||||||||||| |||||| |||||| || ||| |||||||||| |
|
|
| T |
5127987 |
agaattgccaagtcactaatattctgaaagggattattttacaggtttg |
5127939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 5370682 - 5371130
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| ||||||||||| |||||| ||||| |||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
5370682 |
aaaagcattggatacatttcattgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtcttggatgtcaccaacaaattatctcc |
5370781 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|| ||||| ||||||||| |||| | |||||||| |||||| || ||||||||||| |||||||||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
5370782 |
cacccctatttcaaacatgtaatatgatgtcatctcttgttcctttagatgtaccacatagtagttcccatgaactatcatcaattttcaagtaccttcc |
5370881 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagggg |
317 |
Q |
| |
|
|| ||||| ||||||||||||| | || ||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||| | ||||||||||| | |
|
|
| T |
5370882 |
aattcttcgaagtctttgggtggaatgtagctcggaacttcaactttctcatgatgcagcaacaattttggatgtcttatatgcgatagattataaggag |
5370981 |
T |
|
| Q |
318 |
tttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaa |
417 |
Q |
| |
|
| ||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||| |
|
|
| T |
5370982 |
atggaaccaactgcaattacatcacaagtatcaaataagactacttctacatcacaagtatcaaaacattcctcaacgtctcttttaattcaaattggaa |
5371081 |
T |
|
| Q |
418 |
cgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg |
466 |
Q |
| |
|
|||||||| | | || |||||| ||||||||| |||| |||||||||| |
|
|
| T |
5371082 |
tgaattgccgaataactaatattctgaaagagataattttacaggtttg |
5371130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 5157598 - 5157150
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||||||||| ||| | | ||| ||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5157598 |
aaaagcattggatacatctctttgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcc |
5157499 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|||| | | ||||||||||| || ||||||||| |||||| || ||||||||||| |||||| ||||| ||||||| |||||||||| ||| ||||| |
|
|
| T |
5157498 |
catctccatttcaaacatctgctgccatgtcatctcttgttcctttagatgtaccacatagtaattcccaggaactatcatcgatttcccagtgtcttcc |
5157399 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagggg |
317 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||| |||| |
|
|
| T |
5157398 |
aagtcttcgaagtctatgggtggagtgcagctcggaacttcaactttctcatgatgcagcaataattttggatgccctgtatgccacaaattctaagaat |
5157299 |
T |
|
| Q |
318 |
tttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaa |
417 |
Q |
| |
|
|| ||| ||| | || ||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
5157298 |
ttggaaccaactacagctacatcacaattatcaaatgtgactacttctacatcccaagtatcaaaacattcctcgaagtctcttttaattcaaattggaa |
5157199 |
T |
|
| Q |
418 |
cgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg |
466 |
Q |
| |
|
||||||||||| ||| |||||| ||||||| | |||| |||||||||| |
|
|
| T |
5157198 |
tgaattgccaagccactaatattctgaaagatataattttacaggtttg |
5157150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 5102584 - 5102250
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5102584 |
aaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttccatctatcatctggtcttggatgtcaccaacaaataatcttc |
5102485 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||| |||||| || ||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
5102484 |
cacccctatttcaaacatctaatatcatgtcatctcttgttcctctagatgtaccacatagtagttcccacgaactatcatcgatttccatgtaccttcc |
5102385 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagggg |
317 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| || ||| | || ||||| | |
|
|
| T |
5102384 |
aaatcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctcatgatgcagcaataattttggatgccttgcataccataaatcgtaaggag |
5102285 |
T |
|
| Q |
318 |
tttgaatcaattgcaattacatcacaggtatcaaa |
352 |
Q |
| |
|
|| ||| ||| ||||| ||| ||||| |||||||| |
|
|
| T |
5102284 |
ttggaaccaactgcaactacgtcacaagtatcaaa |
5102250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 5426022 - 5426318
Alignment:
| Q |
19 |
aaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctc |
118 |
Q |
| |
|
|||||||||||||||| ||| | || ||| |||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||||||| | |
|
|
| T |
5426022 |
aaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcaccaacaaataatctccc |
5426121 |
T |
|
| Q |
119 |
atccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcca |
218 |
Q |
| |
|
||||| | ||||||||||| || |||||||||| |||||| || ||||||||||| |||||| ||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
5426122 |
atccccatttcaaacatctgatatcatgtcatctcttgttcctttagatgtaccacatagtaattcccaggaactatcatcgatttcccagtaccttcca |
5426221 |
T |
|
| Q |
219 |
agtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagg |
315 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
5426222 |
aatcttcaaaggctttgggtggagtgcagctcagaacttcaactttctcatgatgcagcaataattttagatgccttgtatgccacaagttataagg |
5426318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 5066664 - 5066384
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||||||||| ||| | || ||| |||||||||| || |||||||||||||| |||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
5066664 |
aaaagcattggatacatctctttgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcaccaacaaataatctcc |
5066565 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|||||||| |||||||||||| | ||||| |||| |||||| || ||||||||||| ||||||| |||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
5066564 |
catccctatttcaaacatctactatcatgccatctcttgttcctttagatgtaccacatagtagctcccatgaactatcatcaatttccaagtaccttcc |
5066465 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttata |
298 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||| |||||||||| ||||||| ||||||| |||||||| ||||| |
|
|
| T |
5066464 |
aagtcttcgaagtctttgggtggagtgcagttcagaacatcaactttctaatgatgcaacaataatattggatgctttata |
5066384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 5350505 - 5350833
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||||||||| ||| | || ||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| | |
|
|
| T |
5350505 |
aaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgttt------atcattcattcttggatgtcaccaacaaataatcacc |
5350598 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|||||| | ||||||||||| | |||||||||| |||||| || ||||||||||| |||||||||||| ||||||| |||||||||| ||| ||||| |
|
|
| T |
5350599 |
catccccatttcaaacatctgacatcatgtcatctcttgttcctttagatgtaccacatagtagttcccaggaactatcatcgatttcccagtgtcttcc |
5350698 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagggg |
317 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
5350699 |
aagtcttcaaagtctttgtgtggagtgtagctcggaacttcaactttctcatgatgcagcaataattttggatgccttgtatgccacaaattataaggag |
5350798 |
T |
|
| Q |
318 |
tttgaatcaattgcaattacatcacaggtatcaaa |
352 |
Q |
| |
|
|| ||||||| | || ||||||| | |||||||| |
|
|
| T |
5350799 |
ttggaatcaactacagctacatcaaaagtatcaaa |
5350833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 84 - 352
Target Start/End: Complemental strand, 5137570 - 5137302
Alignment:
| Q |
84 |
atctggtcttggttgtcaccaacaaataatctctcatccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagtt |
183 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| |||||||||| |||||| || ||||||||||| ||||||||| |
|
|
| T |
5137570 |
atctggtcttggatgtcaccaacaaataatctcccacccctatttcaaacatctaatatcatgtcatctcttgttcctctagatgtaccacatagtagtt |
5137471 |
T |
|
| Q |
184 |
cccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataat |
283 |
Q |
| |
|
||| ||||||| |||||||| | ||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
5137470 |
cccacgaactatcatcgattttcgtgtaccttccaagtcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctcatgatgcagcaataat |
5137371 |
T |
|
| Q |
284 |
tttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaa |
352 |
Q |
| |
|
|||||||||||| || ||| | || ||||| ||| ||| ||| ||||| ||| ||||| |||||||| |
|
|
| T |
5137370 |
tttggatgccttgcataccataaatcgtaaggagttggaaccaactgcaactacgtcacaagtatcaaa |
5137302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 5383437 - 5383721
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||| |||| ||| |||||| | || |||||||||||||| ||||||||||||||||| || ||||| ||||||| |||| |||||||||||||| |
|
|
| T |
5383437 |
aaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtcctcaacaaataatctcc |
5383536 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
||| || |||||||||| | |||||||||| | |||| || | ||||||||| ||||||||||| ||| |||| ||| ||||||||||||||||| |
|
|
| T |
5383537 |
cattccattttcaaacatcagctatcatgtcatctcatgttcctttcgatgtaccacgtagtagttcccatgacctatcatcaatttccaagtaccttcc |
5383636 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgcc |
302 |
Q |
| |
|
|||| ||| |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
5383637 |
aagtattcgcagtctttgggtgaagtgtagctcggaacttcaagtttctcatgatgctgcaattattttggaagccttatatgcc |
5383721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 5073878 - 5073591
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| |||||| | || ||| |||||||||| |||||||||||||| || || ||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
5073878 |
aaaagcattggatatatttctttgtgcggctatgaaggattctcacgtgatgtgttcccatcgatcatttggtcttggatgtcaccgacaaataatctca |
5073779 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
| |||| | |||| || | || |||||||||| |||| || ||||||||| |||||||||||||| |||||||| ||| |||||||| |||||||| |
|
|
| T |
5073778 |
cttccccatttcagacggttgctgcaatgtcatcccatgttcctttagatgtactaaatagtagttcccatgaactatcatctatttccaattaccttcc |
5073679 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccaca |
305 |
Q |
| |
|
| | |||| | ||||||||||| | ||| | ||| |||||||||||||||| ||||| | || ||||||||||||||||||||||||| |
|
|
| T |
5073678 |
atggcttcgatgtctttgggtggaatgcggatcaaaacttcaactttctcaagatgcagaaagaattttggatgccttatatgccaca |
5073591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 196 - 391
Target Start/End: Original strand, 2938381 - 2938575
Alignment:
| Q |
196 |
tatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgcctt |
295 |
Q |
| |
|
|||| |||| |||| ||||||||||||||| ||||||||||||| | || |||||||| ||||||||||||||||||| |||| | ||||||||| ||| |
|
|
| T |
2938381 |
tatcaattttcaagcaccttccaagtcttccaagtctttgggtggaatgttgctcagaatttcaactttctcatgatgcagcaacagttttggatgtctt |
2938480 |
T |
|
| Q |
296 |
atatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcagaacattcctt |
391 |
Q |
| |
|
|||||| | ||||||||||| | | ||| ||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2938481 |
atatgcgatagattataaggagatggaaccaactacaattacatcacaagtatc-aatatgactacttctacatcacaagtatcaaaacattcctt |
2938575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 5354585 - 5354259
Alignment:
| Q |
17 |
caaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctc |
116 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5354585 |
caaaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc |
5354486 |
T |
|
| Q |
117 |
tcatccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttc |
216 |
Q |
| |
|
||| | | ||||||||||| || ||||||||| ||||||||| | |||||||| | ||||||| | ||| ||| ||| |||| | |||||| |
|
|
| T |
5354485 |
cgatctccatttcaaacatctgctgccatgtcatctcttgtttcttttgatgtaccgagcagtagtttcaatgagttatcatctttttctgaccaccttc |
5354386 |
T |
|
| Q |
217 |
caagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataaggg |
316 |
Q |
| |
|
|||| |||| ||||||| ||||| | |||| || | | ||||||||||| ||||| || ||||||| ||||| |||||||||| | || ||||| |
|
|
| T |
5354385 |
caagacttcgaagtcttcgggtggattgcaattccgtagatcaactttctctagatgcaaaaacaattttgaatgccctatatgccactgtttctaagga |
5354286 |
T |
|
| Q |
317 |
gtttgaatcaattgcaattacatcaca |
343 |
Q |
| |
|
|||||||||| ||||| ||||||||| |
|
|
| T |
5354285 |
atttgaatcaactgcaactacatcaca |
5354259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 164 - 352
Target Start/End: Original strand, 5447838 - 5448026
Alignment:
| Q |
164 |
agatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactt |
263 |
Q |
| |
|
|||||||||| | |||||||| | ||||||| |||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5447838 |
agatgtaccacacagtagttctcaggaactatcatcgttttcccagtacctaccaagtcttcgaagtctttgggtgcagttcagctcagaacttcaactt |
5447937 |
T |
|
| Q |
264 |
tctcatgatgctgcaataattttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaa |
352 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||||||||| ||||||||| ||| ||| || ||| |||||||||| ||||||| |
|
|
| T |
5447938 |
tctcatgaggcagcaataattttggatgctttgtatgccacaaattataaggagttggaactaacggcagttacatcacaaatatcaaa |
5448026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 5344972 - 5345259
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||| | ||| | |
|
|
| T |
5344972 |
aaaagcattggatatatttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaagttctcttt |
5345071 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
||| | |||||||| |||| || |||||||| || |||||| ||||| ||||| ||||||| |||| || || | | | |||||||| ||||| | |
|
|
| T |
5345072 |
cattcgaagttcaaatatctcctgcgatgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttc |
5345171 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccaca |
305 |
Q |
| |
|
||| |||| |||||| ||||| |||| |||||||||| ||||||||| | ||||| ||| ||||||||||| ||||| |||||| |
|
|
| T |
5345172 |
aaggcttcgaagtctatgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccaca |
5345259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 5690129 - 5689842
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||| || |||||||| || || ||||||||||| ||||||||| | ||||| |||||||| ||||||||| |||||||||||| | ||| | |
|
|
| T |
5690129 |
aaaagcattgggtatatttctctgtgcggacatgaaggattctcacgtgatatatttccatctatcatttggtcttggatgtcaccaacaagtgctcttt |
5690030 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|||||| || |||||||| || ||||||||| ||||||||| ||||| ||||| ||||||||| | ||||| | ||| |||||||| ||||| | |
|
|
| T |
5690029 |
catccccctttgaaacatctgctgccatgtcatctcttgtttctttagatataccatgtagtagttctcaggaactgtcatctatttccaaccacctttc |
5689930 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccaca |
305 |
Q |
| |
|
||| |||| |||||| ||||| |||| | |||||||||||||||||| | ||||| ||| ||||||||||| ||||| |||||| |
|
|
| T |
5689929 |
aaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgccaca |
5689842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 5243883 - 5243603
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||| ||||| |||||| | |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||| | ||| | |
|
|
| T |
5243883 |
aaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaagttctcttt |
5243784 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| || |||||| ||||| |||| ||||||| |||| || || | | | ||||||| ||||| | |
|
|
| T |
5243783 |
catcccaagttcaaacatctcctgcgatgtcatctctggtttctttagatataccgcatagtagctcccaagagctgtcaactatttccatccacctttc |
5243684 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttata |
298 |
Q |
| |
|
||| |||| ||| || | ||| |||| |||||||||| ||||||||| | ||||| ||| ||||||||||||||||| |
|
|
| T |
5243683 |
aaggcttcgaagcctattggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgccttata |
5243603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 377 - 469
Target Start/End: Complemental strand, 5354198 - 5354106
Alignment:
| Q |
377 |
atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtct |
469 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| | ||||||||||| |
|
|
| T |
5354198 |
atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttgtct |
5354106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 5278677 - 5278967
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||||||||| ||| | || ||| |||||||||| ||||||||| | ||||| || ||||| ||||||||| |||||||||||| | ||| | |
|
|
| T |
5278677 |
aaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaagttctcttt |
5278776 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtc---atgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtacct |
214 |
Q |
| |
|
|||||| ||||||||||| || | || ||||| ||||||||| ||||| ||||| |||||||||| | ||||| | ||| |||||| | |||| |
|
|
| T |
5278777 |
catccccctttcaaacatcttctgccaatatttcatctcttgtttctttagatataccacatagtagttctcaggaactgtcatctatttccgaccacct |
5278876 |
T |
|
| Q |
215 |
tccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccaca |
305 |
Q |
| |
|
| |||| |||| |||||| ||||| |||| | |||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
5278877 |
ttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccaca |
5278967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 364 - 466
Target Start/End: Original strand, 5350815 - 5350917
Alignment:
| Q |
364 |
ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt |
463 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||| ||| |||||| ||||||||| |||| ||||||| |
|
|
| T |
5350815 |
ctacatcaaaagtatcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagagataattttacaggt |
5350914 |
T |
|
| Q |
464 |
ttg |
466 |
Q |
| |
|
||| |
|
|
| T |
5350915 |
ttg |
5350917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 5176850 - 5177140
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||||||||| ||| | || ||| |||||||||| ||||||||| | ||||| || ||||| ||||||||| |||||||||||| | ||| | |
|
|
| T |
5176850 |
aaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaagttctcttt |
5176949 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtc---atgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtacct |
214 |
Q |
| |
|
|||||| ||||||||||| || | || ||||| || |||||| ||||| ||||| |||||||||| | ||||| | ||| |||||| | |||| |
|
|
| T |
5176950 |
catccccctttcaaacatcttctgccaatatttcatctctcgtttctttagatataccacatagtagttctcaggaactgtcatctatttccgaccacct |
5177049 |
T |
|
| Q |
215 |
tccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccaca |
305 |
Q |
| |
|
| |||| |||| |||||| ||||| |||| | |||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
5177050 |
ttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccaca |
5177140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 364 - 466
Target Start/End: Complemental strand, 5102268 - 5102166
Alignment:
| Q |
364 |
ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt |
463 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||| ||| |||||| ||||||| | |||| ||||||| |
|
|
| T |
5102268 |
ctacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggt |
5102169 |
T |
|
| Q |
464 |
ttg |
466 |
Q |
| |
|
||| |
|
|
| T |
5102168 |
ttg |
5102166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 364 - 466
Target Start/End: Complemental strand, 5137320 - 5137218
Alignment:
| Q |
364 |
ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt |
463 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||| ||| |||||| ||||||| | |||| ||||||| |
|
|
| T |
5137320 |
ctacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggt |
5137221 |
T |
|
| Q |
464 |
ttg |
466 |
Q |
| |
|
||| |
|
|
| T |
5137220 |
ttg |
5137218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 366
Target Start/End: Original strand, 5397092 - 5397409
Alignment:
| Q |
49 |
atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatccctagttcaaacatctaatgtcatgtc |
148 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||| | ||||||| |||||||||||| ||| ||| ||| | | ||||||||||| || |||||| |
|
|
| T |
5397092 |
atgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaattaacctcccatttccatttcaaacatctgctgccatgtc |
5397191 |
T |
|
| Q |
149 |
atcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagc |
248 |
Q |
| |
|
||| ||| ||||| || | ||| ||| ||||||||| | ||||||| ||| |||| || | |||||||| |||| ||||||||| ||| | |||| |
|
|
| T |
5397192 |
atctcttatttctttacacgtaacaagtagtagttcgcacgaactatcatctttttcgaaacaacttccaaggcttcgaagtctttgcgtggattgcaat |
5397291 |
T |
|
| Q |
249 |
tcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtat |
348 |
Q |
| |
|
|| ||| ||||||||||| |||||| ||||||||||||||| ||| ||| ||| ||| ||| | || ||||||| | || ||||||||| | || |
|
|
| T |
5397292 |
tctgaagatcaactttctcttgatgcaaaaataattttggatgctctatgtgctacaaattctaaagaattggaatcaactaaaactacatcacaagaat |
5397391 |
T |
|
| Q |
349 |
caaatatgactacttcta |
366 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
5397392 |
ccaatatgactacttcta |
5397409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 5426330 - 5426439
Alignment:
| Q |
357 |
actacttctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattg |
456 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||| || ||||||||||||||||| |||| ||||||||||| | | ||||| ||||||||| |||| |
|
|
| T |
5426330 |
actactgctacatcccaagtatcaaaacattccttaaaatctcttttaattcaaattggaatgaattgccaagcctctgatattctgaaagagataattt |
5426429 |
T |
|
| Q |
457 |
tacaggtttg |
466 |
Q |
| |
|
|||||||||| |
|
|
| T |
5426430 |
tacaggtttg |
5426439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 5397463 - 5397536
Alignment:
| Q |
393 |
aagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||| |||||||||| |
|
|
| T |
5397463 |
aagtctcttttaattcaaatgggaacgaattgtcaagttgccaatattctgaaagagataattttacaggtttg |
5397536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 5181898 - 5181778
Alignment:
| Q |
17 |
caaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctc |
116 |
Q |
| |
|
||||||||||| ||| ||||| | ||||| |||||||||| |||| |||||||||||| | ||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
5181898 |
caaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgtgtttccagcgatcatttggtcttggatgtcaccgacaaataatctc |
5181799 |
T |
|
| Q |
117 |
tcatccctagttcaaacatct |
137 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
5181798 |
ccatccccatttcaaacatct |
5181778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 463
Target Start/End: Original strand, 5448009 - 5448107
Alignment:
| Q |
365 |
tacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt |
463 |
Q |
| |
|
|||||||||| ||||| | |||| ||| |||||||||||||||||||| |||| ||||||| ||||||| ||||| ||||||||| |||| ||||||| |
|
|
| T |
5448009 |
tacatcacaaatatcaaaccatttcttgaagtctcttttaattcaaattggaatgaattgcgaagtcactgatattctgaaagagataattttacaggt |
5448107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 364
Target Start/End: Complemental strand, 5284161 - 5284010
Alignment:
| Q |
213 |
cttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattata |
312 |
Q |
| |
|
|||||| | |||||||||||||||||| | |||| ||| ||| ||||||||||| |||| | |||| ||||||||||| |||||||| | ||| || |
|
|
| T |
5284161 |
cttccatggcttcaaagtctttgggtggattgcaactccgaagatcaactttctcttgattcaacaatgattttggatgctttatatgctatgaattcta |
5284062 |
T |
|
| Q |
313 |
aggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttc |
364 |
Q |
| |
|
| | || |||||||||| | ||||||||||| |||||||| ||||||||| |
|
|
| T |
5284061 |
atgcattggaatcaattgacactacatcacaggaatcaaatacgactacttc |
5284010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 5181759 - 5181629
Alignment:
| Q |
171 |
ccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatg |
270 |
Q |
| |
|
||||||||| ||| || ||| || | ||| || ||||||||||||||| | |||| | |||||||||| |||| |||||||||||||||||||||| | |
|
|
| T |
5181759 |
ccaaatagtggtttccatgacctttcatctatgtccaagtaccttccatggcttcgatgtctttgggttgagtgtggctcagaacttcaactttctcaag |
5181660 |
T |
|
| Q |
271 |
atgctgcaataattttggatgccttatatgc |
301 |
Q |
| |
|
| | | || |||||||||||| |||||||| |
|
|
| T |
5181659 |
acacagaaagaattttggatgctttatatgc |
5181629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 482
Target Start/End: Complemental strand, 5243496 - 5243390
Alignment:
| Q |
377 |
atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtc-ttatcta |
475 |
Q |
| |
|
||||||| ||| ||| |||||| || |||| |||||||||| |||||||||||| ||||||| | | ||||| || ||| |||||||||||| || |||| |
|
|
| T |
5243496 |
atcagaagattacttaaagtctgttctaatacaaatgggaatgaattgccaagtaaccaataatctaaaagaaaacattttacaggtttgtcattctcta |
5243397 |
T |
|
| Q |
476 |
tctctct |
482 |
Q |
| |
|
||||||| |
|
|
| T |
5243396 |
tctctct |
5243390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 5434685 - 5434774
Alignment:
| Q |
377 |
atcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg |
466 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| ||| ||||||| || ||||||| ||| | |||||| ||| |||||||||| |
|
|
| T |
5434685 |
atcaaaacattccttcaactctcttttaattcaaatgagaatgaattgcaaactcaccaacattctcgaagagatcattttacaggtttg |
5434774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 469
Target Start/End: Complemental strand, 5066277 - 5066186
Alignment:
| Q |
378 |
tcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttgtct |
469 |
Q |
| |
|
||||||| |||| | |||||| || |||| |||||||| | |||||||||||||||||||| | ||||||| || || ||||||||||||| |
|
|
| T |
5066277 |
tcagaactttccatgaagtctgttctaatacaaatgggtatgaattgccaagtcaccaataatctgaaagaaaacatgttacaggtttgtct |
5066186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 465
Target Start/End: Complemental strand, 5181543 - 5181474
Alignment:
| Q |
396 |
tctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggttt |
465 |
Q |
| |
|
||||| || |||||||| |||| |||||||||||||||||||||| ||| ||| || ||| ||||||||| |
|
|
| T |
5181543 |
tctctgtttattcaaataggaatgaattgccaagtcaccaatattctgagagataacattttacaggttt |
5181474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 369
Target Start/End: Original strand, 5434616 - 5434650
Alignment:
| Q |
335 |
tacatcacaggtatcaaatatgactacttctacat |
369 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5434616 |
tacatcacaagtatcaaatatgactacttctacat |
5434650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 5256950 - 5256902
Alignment:
| Q |
402 |
ttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagaga |
450 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| | ||||||| |
|
|
| T |
5256950 |
ttaattcaaatgggaataaattgccatgtcaccaatattctcaaagaga |
5256902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 49 - 315
Target Start/End: Complemental strand, 36213768 - 36213502
Alignment:
| Q |
49 |
atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatccctagttcaaacatctaatgtcatgtc |
148 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||| ||||||||| |||||||||||||| |||| | | || | |||||||||||| | ||||||| |
|
|
| T |
36213768 |
atgaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtcaccaacaaatgttctcccgttccgatttcaaacatctactatcatgtc |
36213669 |
T |
|
| Q |
149 |
atcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagc |
248 |
Q |
| |
|
||| |||||| || |||||||| || | || | ||||| || ||| | ||| ||||| | ||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
36213668 |
atctcttgttcctctagatgtatcacacagcaattcccatgcactgtcatcaatttcgacgtaccttccgagtctacgaagtctttgggtgcagtgcagc |
36213569 |
T |
|
| Q |
249 |
tcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataagg |
315 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36213568 |
tcagagtctcaactttctcatgatgcagaaataattttggatgccttatatgccactaattataagg |
36213502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 36213482 - 36213382
Alignment:
| Q |
365 |
tacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtt |
464 |
Q |
| |
|
|||||| ||||||||| | ||||||| || ||| |||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
36213482 |
tacatcgcaagtatcaagaaattccttgaaatcttttttcattcaaatgggaatgaattgccaactttccaatattttgaaagagaaaattgtacaggtt |
36213383 |
T |
|
| Q |
465 |
t |
465 |
Q |
| |
|
| |
|
|
| T |
36213382 |
t |
36213382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 8870 - 8635
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||| |||| ||| |||||| | || |||||||||||||| ||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
8870 |
aaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatctatcattaagtcttggatgtctccaacaaataatctcc |
8771 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttcc |
217 |
Q |
| |
|
|||| |||||||||||| | |||||||||| | |||| || ||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
8770 |
catcttactttcaaacatctactatcatgtcatctcatgttcctttagatgtaccacgtagtagttcccaggaactatcatcaatttccaagtaccttcc |
8671 |
T |
|
| Q |
218 |
aagtcttcaaagtctttgggtgcagtgcagctcaga |
253 |
Q |
| |
|
|||| ||| ||||||||||||| |||| |||||||| |
|
|
| T |
8670 |
aagtattcgaagtctttgggtgaagtgtagctcaga |
8635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 8877720 - 8878005
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| |||||| | || ||| ||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| | |
|
|
| T |
8877720 |
aaaagcattggatatatttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat-taa |
8877818 |
T |
|
| Q |
118 |
ca-tccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttc |
216 |
Q |
| |
|
|| ||| | |||||||||||| |||||||| || |||||| ||||||||||| |||||||||||| ||||| ||| || || ||| |||||| |
|
|
| T |
8877819 |
cagcccccatttcaaacatctaccactatgtcatctctagtttctttagatgtaccatatagtagttcccacaaactagcatcaatatcaaagcaccttc |
8877918 |
T |
|
| Q |
217 |
caagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgcca |
303 |
Q |
| |
|
|| |||||| ||||||||| ||| |||| | || |||||| | ||||||| |||| ||| |||||||||||||| ||||||| |
|
|
| T |
8877919 |
caggtcttcgaagtctttgagtggagtgtggatccaaacttcgattttctcaagatgtgacaaccattttggatgccttgtatgcca |
8878005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 20838743 - 20838831
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaac |
106 |
Q |
| |
|
|||||||||||||| || || |||||||| |||||||||| |||| |||||| ||||| ||| |||| ||||||||| |||||||||| |
|
|
| T |
20838743 |
aaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttccttctctcatttggtcttggatgtcaccaac |
20838831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 8878113 - 8878186
Alignment:
| Q |
393 |
aagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggtttg |
466 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||||| | || |||| | |||||||||||||| |||||||||| |
|
|
| T |
8878113 |
aagtctctatttattcaaatgggaatgaattgccaattaactaatactctgaaagagaaaattttacaggtttg |
8878186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 20812388 - 20812476
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaac |
106 |
Q |
| |
|
|||||||||| ||| || || |||||||| | |||||||| ||||||||||| ||||| ||| |||| ||||||||| |||||||||| |
|
|
| T |
20812388 |
aaaagcattgcatatatatcactatgtggatacgaaggattatcacgtgatgtttttccttctctcatttggtcttggatgtcaccaac |
20812476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 12599142 - 12599054
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaac |
106 |
Q |
| |
|
|||||||||||||| || || | ||||| |||||||||| ||||||||||| ||||| ||| ||| ||||||||| |||||||||| |
|
|
| T |
12599142 |
aaaagcattggatatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatgtcaccaac |
12599054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 15803022 - 15803108
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcacca |
104 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||||||| |||| |||||| ||||| ||| |||| |||||||| | |||||| |
|
|
| T |
15803022 |
aaaagcattggatatatatctctatgtggatataaaggattatcacatgatgtttttccttctctcattaggtcttggatatcacca |
15803108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 171 - 412
Target Start/End: Complemental strand, 47986718 - 47986477
Alignment:
| Q |
171 |
ccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatg |
270 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||| || |||||| ||| |||| ||||||||||||| | |||| ||||||| ||||||||||| | |
|
|
| T |
47986718 |
ccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctgg |
47986619 |
T |
|
| Q |
271 |
atgctgcaataattttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatc |
370 |
Q |
| |
|
|||| || ||||||||||| ||| |||||||| || ||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
47986618 |
atgcaaaaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagt |
47986519 |
T |
|
| Q |
371 |
acaagtatcagaacattccttcaagtctcttttaattcaaat |
412 |
Q |
| |
|
|| |||| || |||||||||| ||||||||||||||||| |
|
|
| T |
47986518 |
ttcaggatcaaaatattccttcaaatctcttttaattcaaat |
47986477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 171 - 412
Target Start/End: Complemental strand, 47996005 - 47995764
Alignment:
| Q |
171 |
ccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatg |
270 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||| || |||||| ||| |||| ||||||||||||| | |||| ||||||| ||||||||||| | |
|
|
| T |
47996005 |
ccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctgg |
47995906 |
T |
|
| Q |
271 |
atgctgcaataattttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatc |
370 |
Q |
| |
|
|||| || ||||||||||| ||| |||||||| || ||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
47995905 |
atgcaaaaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagt |
47995806 |
T |
|
| Q |
371 |
acaagtatcagaacattccttcaagtctcttttaattcaaat |
412 |
Q |
| |
|
|| |||| || |||||||||| ||||||||||||||||| |
|
|
| T |
47995805 |
ttcaggatcaaaatattccttcaaatctcttttaattcaaat |
47995764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 171 - 412
Target Start/End: Complemental strand, 48005292 - 48005051
Alignment:
| Q |
171 |
ccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatg |
270 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||| || |||||| ||| |||| ||||||||||||| | |||| ||||||| ||||||||||| | |
|
|
| T |
48005292 |
ccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctgg |
48005193 |
T |
|
| Q |
271 |
atgctgcaataattttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatc |
370 |
Q |
| |
|
|||| || ||||||||||| ||| |||||||| || ||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
48005192 |
atgcaaaaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagt |
48005093 |
T |
|
| Q |
371 |
acaagtatcagaacattccttcaagtctcttttaattcaaat |
412 |
Q |
| |
|
|| |||| || |||||||||| ||||||||||||||||| |
|
|
| T |
48005092 |
ttcaggatcaaaatattccttcaaatctcttttaattcaaat |
48005051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 171 - 412
Target Start/End: Complemental strand, 48014577 - 48014336
Alignment:
| Q |
171 |
ccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagtcttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatg |
270 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||| || |||||| ||| |||| ||||||||||||| | |||| ||||||| ||||||||||| | |
|
|
| T |
48014577 |
ccaagtagtagttcccatgaactatcctccttttctaaccaccttcaaaggcttcgaagtctttgggtggattgcaactcagaatgtcaactttctctgg |
48014478 |
T |
|
| Q |
271 |
atgctgcaataattttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatc |
370 |
Q |
| |
|
|||| || ||||||||||| ||| |||||||| || ||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
48014477 |
atgcaaaaaatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagt |
48014378 |
T |
|
| Q |
371 |
acaagtatcagaacattccttcaagtctcttttaattcaaat |
412 |
Q |
| |
|
|| |||| || |||||||||| ||||||||||||||||| |
|
|
| T |
48014377 |
ttcaggatcaaaatattccttcaaatctcttttaattcaaat |
48014336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 47986811 - 47986739
Alignment:
| Q |
49 |
atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
47986811 |
atgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc |
47986739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 47996098 - 47996026
Alignment:
| Q |
49 |
atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
47996098 |
atgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc |
47996026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 48005385 - 48005313
Alignment:
| Q |
49 |
atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
48005385 |
atgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc |
48005313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 48014670 - 48014598
Alignment:
| Q |
49 |
atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
48014670 |
atgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctcacatc |
48014598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 6905865 - 6905806
Alignment:
| Q |
49 |
atgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaa |
108 |
Q |
| |
|
|||||||||| ||||||||| | ||||| ||| |||| ||||||||| |||||||||||| |
|
|
| T |
6905865 |
atgaaggattatcacgtgatatttttccttctctcatttggtcttggatgtcaccaacaa |
6905806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 32411173 - 32411083
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaa |
108 |
Q |
| |
|
|||||||| | ||| || ||||||||||| |||||||||| |||| ||| || ||||| ||| |||| ||||||| | |||||||||||| |
|
|
| T |
32411173 |
aaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttccctctctcatttggtcttagatgtcaccaacaa |
32411083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 4123909 - 4123732
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||| || |||||||||||||| |||||||| | ||||||| ||| |||||||||||||||| |
|
|
| T |
4123909 |
aaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctcc |
4123810 |
T |
|
| Q |
118 |
catccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactat |
195 |
Q |
| |
|
|| || ||||||||| || | |||||||||||||||||| | ||| | ||||||||| ||||| ||| |||| |
|
|
| T |
4123809 |
cacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatcaaatagtatttcccatgatctat |
4123732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 4361192 - 4361520
Alignment:
| Q |
22 |
gcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc |
121 |
Q |
| |
|
||||||||| |||||| | ||||| |||||||||| ||||||||||||||||| |||||||| | ||||||| |||||||||||||| |||||| | |
|
|
| T |
4361192 |
gcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaatggtctctcgcc |
4361291 |
T |
|
| Q |
122 |
cctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaagtaccttccaagt |
221 |
Q |
| |
|
| |||||||| || || |||||||||||||||| | || ||| | ||||||||| ||||| ||| ||| ||| ||||| | |||||| | |
|
|
| T |
4361292 |
cacttttcaaacaactgctgggatgtcatcccttgtttttttaaatgcaacaaatagtatttcccatgatatatcatctatttcttatgtccttccgaag |
4361391 |
T |
|
| Q |
222 |
cttcaaagtctttgggtgcagtgcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccacagattataaggggtttg |
321 |
Q |
| |
|
|||||||| |||||| || | || | ||||||||||||||||| || || | |||||||||||| |||| ||| ||| ||| ||| |||| || | |
|
|
| T |
4361392 |
cttcaaagcctttggctggaatgtggatcagaacttcaactttcacaggacacagcaataattttgaatgctttaagtgcaacaaattccaaggaattgg |
4361491 |
T |
|
| Q |
322 |
aatcaattgcaattacatcacaggtatca |
350 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| |
|
|
| T |
4361492 |
aatcaactgcaactacatcacaagtatca |
4361520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 4320589 - 4320502
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaa |
105 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
4320589 |
aaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaa |
4320502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 4344761 - 4344947
Alignment:
| Q |
22 |
gcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatc |
121 |
Q |
| |
|
||||||||| |||||| | ||||| |||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||| | |
|
|
| T |
4344761 |
gcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaacaaatggtctctcgcc |
4344860 |
T |
|
| Q |
122 |
cctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatagtagttcccgtgaactattatcgatttccaa |
208 |
Q |
| |
|
| |||||||| || || |||||||| ||||||||| || ||| | ||||||||| ||||| ||| ||| ||| |||||||| |
|
|
| T |
4344861 |
cacttttcaaacaactgctgggatgtcatcgcttgtttctttaaatgcaacaaatagtatttcccatgatatatcatctatttccaa |
4344947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 6651183 - 6651298
Alignment:
| Q |
23 |
cattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatcc |
122 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| | | || | |||||||| |||||||| ||| |||| | ||||| |
|
|
| T |
6651183 |
cattggatatatttctctatgtggctttgaaggattttcacgagatgtatttccttttctcgttcggtcttggatgtcaccatcaactaatgtaacatcc |
6651282 |
T |
|
| Q |
123 |
ctagttcaaacatcta |
138 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6651283 |
ctagttcaaacatcta |
6651298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 6498496 - 6498401
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataat |
113 |
Q |
| |
|
||||||||||||||||||||| || |||| | ||||||||||||||||||| ||||| ||| |||| |||||||| |||||||| |||||||| |
|
|
| T |
6498496 |
aaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttccttctctcattcggtcttggatgtcaccatcaaataat |
6498401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 6545418 - 6545299
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| |||||| | ||||| ||||||||||||||||||||| || || ||| |||| |||||||| |||||||| |||||||| | |
|
|
| T |
6545418 |
aaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggctgtcaccatcaaataatgtga |
6545319 |
T |
|
| Q |
118 |
catccctagttcaaacatct |
137 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
6545318 |
tatccttagttcaaacatct |
6545299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 6588166 - 6588047
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| |||||| | |||||| ||||||||||||||||||||| || || ||| |||| |||||||| |||| ||| |||||||| | |
|
|
| T |
6588166 |
aaaagcattggatatatttctttttgtggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggatgtcgccatcaaataatgtga |
6588067 |
T |
|
| Q |
118 |
catccctagttcaaacatct |
137 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
6588066 |
tatcccttgttcaaacatct |
6588047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 4335456 - 4335557
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||||||||| || || ||| | ||||| |||||||||| || |||||||||||||| ||||| || ||||||||| || ||||||||||||| ||| |
|
|
| T |
4335456 |
aaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccttctataatttggtcttggatggtaccaacaaataatgtct |
4335555 |
T |
|
| Q |
118 |
ca |
119 |
Q |
| |
|
|| |
|
|
| T |
4335556 |
ca |
4335557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 6675817 - 6675909
Alignment:
| Q |
21 |
agcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataat |
113 |
Q |
| |
|
|||||||||| ||| ||| |||||||| |||||||||||||| |||||| ||||| ||| |||| ||||||| |||||||| |||||||| |
|
|
| T |
6675817 |
agcattggattcatctctttatgtggctttgaaggattttcacttgatgtatttccttctctcattaagtcttggatgtcaccatcaaataat |
6675909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 6815581 - 6815699
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| |||||| || ||||| |||||||||| |||||||||| ||| | ||| || | | |||||| |||||||| |||||||| | |
|
|
| T |
6815581 |
aaaagcattggatatatttctttaggtggctttgaaggatttacacgtgatgtattttcttctctcgttcgctcttggatgtcaccatcaaataatgtga |
6815680 |
T |
|
| Q |
118 |
catccctagttcaaacatc |
136 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
6815681 |
tatccctagttcacacatc |
6815699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 6822802 - 6822854
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgt |
70 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
6822802 |
aaaagcattggatatatttctttatgcggctttgaaggattttcacgtgatgt |
6822854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 6532170 - 6532083
Alignment:
| Q |
50 |
tgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatccctagttcaaacatct |
137 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| |||||||| |||||||| |||| ||| | |||||||||||||||||| |
|
|
| T |
6532170 |
tgaaggattttcaaatgatgtatttccttctatcattcggtcttggatgtcaccatcaaacaatgtgaagtccctagttcaaacatct |
6532083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 6728517 - 6728636
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
||||| |||||||| |||||| | ||||| ||||||||||||||||||||| || || ||| | | ||||||||| |||| ||| |||||||| | |
|
|
| T |
6728517 |
aaaagtattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctcttgtttggtcttggatgtcgccatcaaataatgtga |
6728616 |
T |
|
| Q |
118 |
catccctagttcaaacatct |
137 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
6728617 |
tatcccttgttcaaacatct |
6728636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 6753071 - 6753190
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||||||||||||| |||||| | ||||| ||||||||||||||||||||| || || ||| |||| |||||||| | || ||| ||||||| | |
|
|
| T |
6753071 |
aaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggatatcgccatcaaataacataa |
6753170 |
T |
|
| Q |
118 |
catccctagttcaaacatct |
137 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
6753171 |
tatccttagttcaaacatct |
6753190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 6621477 - 6621419
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttcc |
76 |
Q |
| |
|
|||| ||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
6621477 |
aaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcc |
6621419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 6758835 - 6758929
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataa |
112 |
Q |
| |
|
||||||||| ||| |||||||| |||||| |||||||||| |||||||| | ||||| | | |||| ||||| || |||||||||||||||| |
|
|
| T |
6758835 |
aaaagcattagatttatttctctgtgtggctttgaaggatttgcacgtgatatatttccttttgtcattcggtctaggatgtcaccaacaaataa |
6758929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 6837385 - 6837502
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||| ||||||||| |||||| || | ||| ||||||||||||||||||||| || || ||| |||| | |||||| |||| || |||||||| | |
|
|
| T |
6837385 |
aaaaacattggatatatttctttaagcggctttgaaggattttcacgtgatgtattcccttctctcattcgctcttggatgtcgccttcaaataatgtga |
6837484 |
T |
|
| Q |
118 |
catccctagttcaaacat |
135 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6837485 |
tatccctagttcaaacat |
6837502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 6651541 - 6651585
Alignment:
| Q |
396 |
tctcttttaattcaaatgggaacgaattgccaagtcaccaatatt |
440 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
6651541 |
tctctcttaattcaaatgggaacgaaatgccaagtctctaatatt |
6651585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 4791 - 4676
Alignment:
| Q |
23 |
cattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctctcatcc |
122 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| | | || | |||||||| |||||||| ||| |||| | ||||| |
|
|
| T |
4791 |
cattggatatatttctctatgtggctttgaaggattttcacgagatgtatttccttttctcgttcggtcttggatgtcaccatcaactaatgtaacatcc |
4692 |
T |
|
| Q |
123 |
ctagttcaaacatcta |
138 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4691 |
ctagttcaaacatcta |
4676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 3262716 - 3262629
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaac |
106 |
Q |
| |
|
|||||||||||||| || || |||||||| |||| ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
3262716 |
aaaagcattggatatatatccctatgtggatatga-ggattttcacgtgatgtttttccctctatcatttggtcttggatgtcaccaac |
3262629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 3407395 - 3407323
Alignment:
| Q |
36 |
tctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaa |
108 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||| ||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
3407395 |
tctctatgtggatatcaaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa |
3407323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 3391626 - 3391536
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaa |
108 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||| |||| | |||| ||||| ||| |||| |||||||| |||||||||||| |
|
|
| T |
3391626 |
aaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaacaa |
3391536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31175958 - 31176046
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaac |
106 |
Q |
| |
|
|||||||||| ||| || ||||||||||| |||||||||| ||| |||| || ||||| ||| |||| ||||||||| |||||||||| |
|
|
| T |
31175958 |
aaaagcattgcatatatatctctatgtggatatgaaggattatcatgtgacgtttttccttctctcatttggtcttggatgtcaccaac |
31176046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 3314969 - 3315056
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaa |
105 |
Q |
| |
|
|||| ||||||||| || || ||||||| ||||||| || ||||||||||| ||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
3314969 |
aaaaacattggatatatatccctatgtgaatatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaa |
3315056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 3364280 - 3364370
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaa |
108 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||| |||| | |||| ||||| ||| |||| |||||||| | |||||||||| |
|
|
| T |
3364280 |
aaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatatcaccaacaa |
3364370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 3325090 - 3325003
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaa |
105 |
Q |
| |
|
|||||||||||||| || || || ||||| |||||||| | |||| ||||| ||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
3325090 |
aaaagcattggatatatatccctctgtggatatgaaggactatcacacgatgtttttccttctatcatttggtcttggatgtcaccaa |
3325003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 6770 - 6828
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttcc |
76 |
Q |
| |
|
|||| ||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
6770 |
aaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcc |
6828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 9801 - 9918
Alignment:
| Q |
18 |
aaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaataatctct |
117 |
Q |
| |
|
|||| ||||||||| |||||| || | ||| ||||||||||||||||||||| || || ||| |||| | |||||| |||| || |||||||| | |
|
|
| T |
9801 |
aaaaacattggatatatttctttaagcggctttgaaggattttcacgtgatgtattcccttctctcattcgctcttggatgtcgccttcaaataatgtga |
9900 |
T |
|
| Q |
118 |
catccctagttcaaacat |
135 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9901 |
tatccctagttcaaacat |
9918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University