View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_11 (Length: 505)
Name: NF9751_low_11
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 51214012 - 51213529
Alignment:
| Q |
16 |
acatcaaccggattctttttatcaatttagaaccagctacagcaaaagagtatgaccttaacggatgaaaaatgaaagatgccacgctaagggaaacaaa |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214012 |
acattaaccggattctttttatcaatttagaaccagctacagcaaaagagtatgaccttaacggatgaaaaatgaaagatgccacgctaagggaaacaaa |
51213913 |
T |
|
| Q |
116 |
tattaatgcccaaaattttgagtctttacgaagttcatctgcaggctcaaaaactgtatttatcattttggagttgagaatgcccagaataggtcacatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||| ||||| |
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| T |
51213912 |
tattaatgcccaaaattttgagtctttacgaagttcatctgcaggctcaaaaaatgtatttatcattttggagattagaaggcccagaataggtaacatt |
51213813 |
T |
|
| Q |
216 |
gcaccatttactgttgctgccagagctcccatgagtaacaccgggatttcaggtttgttaagataaacaaggagaaaaaatgggacatctcgagttttag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
51213812 |
gcaccatttactgttgctgccagagctcccatgagtaacaccgggatttcaggcttgttaagataagcaaggagaaaaaatggggcatctcgagttttag |
51213713 |
T |
|
| Q |
316 |
ttgatgatgcttttgctgaaggaacaacttcagaccctcctactagtgtggctggcatagaatttgatgctatgaatgagttgtgactactgtttccaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213712 |
ttgatgatgcttttgctgaaggaacaacttcagaccctcctactagtgtgtctggcatagaatttgatgctatgaatgagttgtgactactgtttccaat |
51213613 |
T |
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| Q |
416 |
ccctgatgatccacggcttaaagacctttggcttgactctcttccagagtctacaaagttttctagcttatccgagtcattatc |
499 |
Q |
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| T |
51213612 |
ccctgatgatccgcggcttaaagacctttggcttgactctcttccagagtctacaaagttttctagcttatccgagtcattatc |
51213529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 49736098 - 49736448
Alignment:
| Q |
16 |
acatcaaccggattctttttatcaatttagaaccagctacagcaaaagagtatgaccttaacggatgaaaaatgaaagatgccacgctaagggaaacaaa |
115 |
Q |
| |
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|||| |||||||| ||||||||||| ||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| || ||||| |||| | | ||||| |
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| T |
49736098 |
acattaaccggatcctttttatcaacttagaaccagcaacagcaaaaaagtaggaccttaacggctgaaaaacgaatgaagccacactaaagaacacaaa |
49736197 |
T |
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| Q |
116 |
tattaatgcccaaaattttgagtctttacgaagttcatctgcaggctcaaaaactgtatttatcattttggagttgagaatgcccagaataggtcacatt |
215 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||| |||||| | || |||||||||||| |||| |
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| T |
49736198 |
cattaatgcccaaaaattcacatctttacgaagttcatctgcaggctcaaagaatgtatttatcatcttggagactaaaagtcccagaataggttgcatt |
49736297 |
T |
|
| Q |
216 |
gcaccatttactgttgctgccagagctcccatgagtaacaccgggatttcaggtttgttaagataaacaaggagaaaaaatgggacatctcgagttttag |
315 |
Q |
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|| ||| |||||| |||||| |||| || ||||||| | ||||||||||||| |||||||||||| | || ||| ||||||||||||| |||| ||| |
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| T |
49736298 |
gctccaattactgctgctgctagagtcccaatgagtagcgccgggatttcaggcttgttaagataagcgagacgaagaaatgggacatctggagtcttac |
49736397 |
T |
|
| Q |
316 |
tt---gatgatgcttttgctgaaggaacaacttcagaccctcctactagtg |
363 |
Q |
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|| ||||||| ||||||||||| || ||||||| ||||| |||||| |
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| T |
49736398 |
ttttatgtgatgctgctgctgaaggaagaaattcagacactccttctagtg |
49736448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 49736460 - 49736507
Alignment:
| Q |
450 |
gactctcttccagagtctacaaagttttctagcttatccgagtcatta |
497 |
Q |
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|||||||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
49736460 |
gactctcttccagattctacaaatgtttctagcttatctgagtcatta |
49736507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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