View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_12 (Length: 498)
Name: NF9751_low_12
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 4749888 - 4749421
Alignment:
| Q |
20 |
cttcggtcttaaatataagagaaatttggatcaacaaaatttgatgtatttaatcaactaaatatatcaacttttgttggccaaactttctacttatgac |
119 |
Q |
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||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
4749888 |
cttcgatcttaaatatacgagaaatttgaatcaacaaaatttaatgtatttaatcaactaaatatatcaaattttgttgaccaaactttctacttatgac |
4749789 |
T |
|
| Q |
120 |
cggaatcattaatatgataagaaagaattcacctatcgcatacctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcgga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4749788 |
cggaatcattaatatgataagaaagaattcacctatcgcatacctgagaaagatatttcatttgcctaatttccgtatgtgtaagtcctttttgatcgga |
4749689 |
T |
|
| Q |
220 |
aggccttcttgccataatctcttcttgttctttctgaaagggttcatagttttgtttgttnnnnnnnnnnnncagtaacaaattttgaaaatgccacatt |
319 |
Q |
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| T |
4749688 |
aggccttcttgccataatctcttcttgttctttctgaaagggttcatagttttgtttgtt-aaaaaaaaaaacagtaacaaattttgaaaatgccacatt |
4749590 |
T |
|
| Q |
320 |
aattaatagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgacca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749589 |
aattaatagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgacca |
4749490 |
T |
|
| Q |
420 |
gctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctg |
488 |
Q |
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| T |
4749489 |
gctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctg |
4749421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 336 - 467
Target Start/End: Complemental strand, 4758054 - 4757923
Alignment:
| Q |
336 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
435 |
Q |
| |
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|||||||| |||| ||||||||||||||||| | |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
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| Q |
436 |
gaagcaagtctataatgtcttcatcttccaac |
467 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaac |
4757923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 259
Target Start/End: Complemental strand, 4758324 - 4758195
Alignment:
| Q |
130 |
aatatgataagaaagaattcacctatcgcatacctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttctt |
229 |
Q |
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||||||| |||||||||||||| | || ||||||| ||||||||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |
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| T |
4758324 |
aatatgacaagaaagaattcacatttcacatacctttgaaagatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtt |
4758225 |
T |
|
| Q |
230 |
gccataatctcttcttgttctttctgaaag |
259 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
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|
| T |
4758224 |
tccatgatctcttcttgttctttctgaaag |
4758195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 21576057 - 21576017
Alignment:
| Q |
33 |
tataagagaaatttggatcaacaaaatttgatgtatttaat |
73 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||| |||| |
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|
| T |
21576057 |
tataagagaattttggatcaacaaaagttgatgtatctaat |
21576017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 17344324 - 17344289
Alignment:
| Q |
33 |
tataagagaaatttggatcaacaaaatttgatgtat |
68 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
17344324 |
tataagagaaatttggatcaacaaaagttgatgtat |
17344289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 41615695 - 41615733
Alignment:
| Q |
33 |
tataagagaaatttggatcaacaaaatttgatgtattta |
71 |
Q |
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||||||||||| |||||||||||||| |||||||||||| |
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| T |
41615695 |
tataagagaaaattggatcaacaaaagttgatgtattta |
41615733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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