View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_13 (Length: 489)
Name: NF9751_low_13
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 42018321 - 42017854
Alignment:
| Q |
1 |
agacaacagcaagagcagcataagtatcttcttgatcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018321 |
agacaacagcaagagcagcataagtatcttcttgttcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgat |
42018222 |
T |
|
| Q |
101 |
tcgagaaaccgccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42018221 |
tcgagaaaccgccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctga |
42018122 |
T |
|
| Q |
201 |
ctctgacaaaatggaagagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacaggg |
300 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018121 |
ctctgacaaaa-ggaagagtttccgttttcttggcagcagctcactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacaggg |
42018023 |
T |
|
| Q |
301 |
ttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018022 |
ttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataa |
42017923 |
T |
|
| Q |
401 |
tcaaagaagtaaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactc |
469 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42017922 |
tcaaagaagtaaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactc |
42017854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 1251541 - 1251074
Alignment:
| Q |
1 |
agacaacagcaagagcagcataagtatcttcttgatcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251541 |
agacaacagcaagagcagcataagtatcttcttgttcccagccgtcaagccatgatgtcatagaacgagacctgcatgaagctcctttcccgctgttgat |
1251442 |
T |
|
| Q |
101 |
tcgagaaaccgccgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctga |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251441 |
tcgagaaaccgacgccttgctgctcttattattatcagctgaaagctttgcttcagtctcgatgacatcggagctcattctctcatccactgacacctga |
1251342 |
T |
|
| Q |
201 |
ctctgacaaaatggaagagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacaggg |
300 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251341 |
ctctgacaaaa-ggaatagtttccgttttcttggcagcagctgactccatttggttggcagcagctcgtgaaattgtctagagatccattcagtacaggg |
1251243 |
T |
|
| Q |
301 |
ttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251242 |
ttttcttctaaatctcctatgcaactcagcagaagcctttgttcttgcttttgtatttgttcatcttctgataatcccatctgacccctgatggaaataa |
1251143 |
T |
|
| Q |
401 |
tcaaagaagtaaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactc |
469 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251142 |
tcaaataagtaaacaatgaatacaagtgagaatatgctccagggacatttgtcgacagtatcttaactc |
1251074 |
T |
|
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