View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_14 (Length: 482)
Name: NF9751_low_14
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 39952101 - 39951635
Alignment:
| Q |
1 |
aaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952101 |
aaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaac |
39952002 |
T |
|
| Q |
101 |
gattgaatattttcaggcaatgagtggatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39952001 |
gattgaatattttcaggcaatgagtagatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcacccatttggagaccat |
39951902 |
T |
|
| Q |
201 |
tcacttgacacagaccattcaagttgtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39951901 |
tcacttgacacagaccattcaagttgtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcatacgaagtaa |
39951802 |
T |
|
| Q |
301 |
atgtttgcagttgtgcatgcatttgagcttgtgtcatgtgaaaatacatcagatacatgccagaa--ataaacttcagtaaatgatattctaaatagaga |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
39951801 |
atgtttgcagttgtgcatgcatttgagcttgtgtcatgtgaaaatacatcagatacatgccagaaatataaacttcagtaaatgatattctaaatacaga |
39951702 |
T |
|
| Q |
399 |
agagaataaaatcaaagtagtcaacagtgttatatgtatatgcatttcccacaccaatataccaaag |
465 |
Q |
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| T |
39951701 |
agagaataaaatcaaagtagtcaacagtgttatatgtatatgcatttcccacaccaatataccaaag |
39951635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 63 - 370
Target Start/End: Original strand, 34230589 - 34230932
Alignment:
| Q |
63 |
taacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgagtggatca----------------------tacccatta |
140 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
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| T |
34230589 |
taacaacataatcagagtgcccatggataaagataaacaattgaatattttcaggcaatgagtagatcaaggccccaccagtggaaagacatacccatta |
34230688 |
T |
|
| Q |
141 |
tcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattca---------------agtt |
225 |
Q |
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|||||||||||||| || | ||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || | |
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| T |
34230689 |
tcaacttgaagccttggagctgttgttgctgtcatgaaatagcacccatctggagaccattcacttgacacagaccattcagctttggttgatgcaagct |
34230788 |
T |
|
| Q |
226 |
gtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatgtttgcagttgtgcatgcatttg |
325 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||| || ||||||| ||||||||||| |||||||||||| || |
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| T |
34230789 |
gtttcctttccacgtaatcccaaaa-tacctagaacaacataatgaaaaacacatgaattcctcatacgaagcaaatgtttgcaattgtgcatgcatctg |
34230887 |
T |
|
| Q |
326 |
agcttgtgtcatgtgaaaatacatcagatacatgccagaaataaa |
370 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
34230888 |
agcttgtgtcatttgaaaatacatcagatacttgccagaaataaa |
34230932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 34230466 - 34230526
Alignment:
| Q |
7 |
caacaaacataatcaagagatatttgctcaacataatttaaatctaatacatattttaaca |
67 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
34230466 |
caacaaacataatcaagagatatttactcaacataatttaaatctaatacatattttaaca |
34230526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 49198344 - 49198431
Alignment:
| Q |
378 |
aaatgatattctaaatagagaagagaataaaatcaaagtagtcaacagtgttatatgtatatgcatttcccacaccaatataccaaag |
465 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||| ||||||||| ||||| |||||||| |||| |
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| T |
49198344 |
aaatgatattctaaatagagaagggaataaaattaaattagtcaacaatgttatatgtgtatgcatttgccacaacaatatactaaag |
49198431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 30339394 - 30339345
Alignment:
| Q |
62 |
ttaacaacaaaatcagagtgcccatggataaagataaacgattgaatatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30339394 |
ttaacaacaaaatcagagtgcccatggataaagataaacaattgaatatt |
30339345 |
T |
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