View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9751_low_16 (Length: 457)

Name: NF9751_low_16
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9751_low_16
NF9751_low_16
[»] chr7 (5 HSPs)
chr7 (22-445)||(42029676-42030099)
chr7 (178-251)||(10325121-10325194)
chr7 (74-147)||(712131-712204)
chr7 (204-244)||(717501-717541)
chr7 (206-258)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (156-258)||(51080720-51080822)
chr1 (206-258)||(2536530-2536582)
chr1 (206-258)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (156-258)||(40287065-40287167)
chr2 (206-258)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (195-251)||(38998907-38998963)
chr3 (204-251)||(27265807-27265854)
chr3 (206-258)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (204-251)||(13757556-13757603)
chr6 (204-251)||(19047096-19047143)
chr6 (206-258)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (204-258)||(14856970-14857024)
chr5 (156-240)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (203-248)||(14541224-14541269)
chr8 (155-247)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (204-247)||(2087389-2087432)
chr4 (206-258)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (206-258)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 445
Target Start/End: Complemental strand, 42030099 - 42029676
Alignment:
Q  22 tggttttctcctctgtgtatgtgatgatgaaataacggaagcatttggtttgcatacgactttgaaatgaacattagaccttcaactttataatttggat 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42030099 tggttttctcctctatgtatgtgatgatgaaataacggaagcatttggtttgcatacgactttgaaatgaacattagaccttcaactttataatttggat 42030000  T
Q  122 tttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |    
T  42029999 tttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacagatgttccataatagtttcaaaaactctcatgttgaat 42029900  T
Q  222 ttaatatgaggcaaactaatggggtcgctcgtgaattgatacagctagtcccatataattttttatgatgatgttccttcatgtatttggtcccatataa 321  Q
    ||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| |||||||| | |||||||||||||||||||||||||    
T  42029899 ttaatatgaggcaaattaatggggtcgctcgtgaattgatacggttagtcctatataatgtttgatgatgatataccttcatgtatttggtcccatataa 42029800  T
Q  322 tgctagtcccacttaaatgcattgagttgcttccctcaacnnnnnnntcaaatcgtttatttttagacaaaagattgatgaacacctcatccatccaatt 421  Q
    |||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029799 tgctggtcccacttaaatgcattgagttgcttccctcaacaaaaaagtcaaatcgtttatttttagacaaaagattgatgaacacctcatccatccaatt 42029700  T
Q  422 ccaacctaaattttttctcctttg 445  Q
    |||||||||| |||||||| ||||    
T  42029699 ccaacctaaactttttctcttttg 42029676  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 10325194 - 10325121
Alignment:
Q  178 tagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 251  Q
    ||||||| |||| |||||| |||| || ||||||||||| |||||||||| ||||||||| |||| ||||||||    
T  10325194 tagacaattgttacttaattgtttaaacaactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctc 10325121  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 712131 - 712204
Alignment:
Q  74 catacgactttgaaatgaacattagaccttcaactttataatttggattttgctctcgactttaagaatgttgt 147  Q
    |||||||||||| |||| |||| | |||||||| || ||||| | ||||||||||| |||| |||||| |||||    
T  712131 catacgactttggaatggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgt 712204  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 717501 - 717541
Alignment:
Q  204 aaaactctcatgttgagtttaatatgaggcaaactaatggg 244  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  717501 aaaactctcatgttgagtttaataggagacaagctaatggg 717541  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 40901905 - 40901853
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  40901905 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 40901853  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 51080822 - 51080720
Alignment:
Q  156 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 255  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  ||||||||||||| |||||||||| ||||||| ||||||||||||||| |||    
T  51080822 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatga 51080723  T
Q  256 att 258  Q
    |||    
T  51080722 att 51080720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 2536582 - 2536530
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  2536582 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 2536530  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 11351697 - 11351645
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  11351697 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 11351645  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 40287167 - 40287065
Alignment:
Q  156 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 255  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  |||||||||||||  ||||||||||||||||| ||||||||||| ||| |||    
T  40287167 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactcatga 40287068  T
Q  256 att 258  Q
    |||    
T  40287067 att 40287065  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 29894421 - 29894369
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  29894421 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 29894369  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 38998907 - 38998963
Alignment:
Q  195 atagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 251  Q
    |||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  38998907 atagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctc 38998963  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 27265807 - 27265854
Alignment:
Q  204 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 251  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  27265807 aaaactctcatgttgagtttaataagagacaaactaatgaggtcgctc 27265854  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 36684916 - 36684968
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||| ||||| |||| ||||||| ||||||||||||||| ||||||    
T  36684916 aactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaatt 36684968  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 13757603 - 13757556
Alignment:
Q  204 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 251  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  13757603 aaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctc 13757556  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 19047096 - 19047143
Alignment:
Q  204 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 251  Q
    ||||||||||||| |||||||||| ||||||| |||||| ||||||||    
T  19047096 aaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctc 19047143  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 942704 - 942756
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    |||||| |||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  942704 aactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaatt 942756  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 14857024 - 14856970
Alignment:
Q  204 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||||| |||||||||||||||||||| |||| | |||||| ||||||    
T  14857024 aaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaatt 14856970  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 32163040 - 32163124
Alignment:
Q  156 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaa 240  Q
    |||||||||||||| |||| | ||||||  |||| |   |||||||  ||||||||||| | |||||||||| ||||||||||||    
T  32163040 ttggttgtattattactgcctgtagacagttgtttcaggatagttttcaaaactctcatatcgagtttaataggaggcaaactaa 32163124  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 14541224 - 14541269
Alignment:
Q  203 aaaaactctcatgttgagtttaatatgaggcaaactaatggggtcg 248  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||    
T  14541224 aaaaactctcgtattgagtttaatatgaggcaaactaatgtggtcg 14541269  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 11911515 - 11911423
Alignment:
Q  155 tttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtc 247  Q
    ||||||||||| || | || || |||||||  |||  ||||||||||  ||||||||||||| ||||| |||| |||| |||| |||||||||    
T  11911515 tttggttgtatcatatttgtatgtagacaatagttaattaatagttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtc 11911423  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 2087432 - 2087389
Alignment:
Q  204 aaaactctcatgttgagtttaatatgaggcaaactaatggggtc 247  Q
    |||||||||||||| | ||||||| |||||||||||||||||||    
T  2087432 aaaactctcatgttaaatttaatacgaggcaaactaatggggtc 2087389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 1394136 - 1394188
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||| || ||||||    
T  1394136 aactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaatt 1394188  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 48113 - 48165
Alignment:
Q  206 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 258  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  48113 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 48165  T

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