View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_18 (Length: 439)
Name: NF9751_low_18
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 9500586 - 9501007
Alignment:
| Q |
1 |
caagcaccactaaagaatttgcaaaatttatgatcgtcagacaatgaacacgcatttttacatgctacacagtcactccctctcatcaattttgcttcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9500586 |
caagcaccactaaagaatttgcaaaatttatgatcgtcagactacgaacacgcatttttacatgctacacagtcactccctctcatcaattttgcttcgc |
9500685 |
T |
|
| Q |
101 |
ttggacatagtgagttcaagtccacgtcgcagccaaccatcgtgcattctccgataccgtttccagatttaggctcaatcattattggaatgttgtaacc |
200 |
Q |
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| T |
9500686 |
ttggacatagtgagttcaagtccacgtcgcagccaaccatcgtgcattctccgataccatttccagatttaggctcaatcattattggaatgttgtaacc |
9500785 |
T |
|
| Q |
201 |
ttccaagaaactgactttgaagaaatcttgtccgcttgaggcatttaaggtgaattctgctagtgtagccggtggtgtggcgtttccatcatcacattcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
9500786 |
ttccaagaaactgactttgaagaaatcttgtccgcttgacgcatttaaggtgaattctgctagtgtagcaggtggtgtggcgcttccatcatcacattcc |
9500885 |
T |
|
| Q |
301 |
acggtggaggaagagcagtcacccgtgacacatgcaaacttgccgttgatatcattagcgcagagggtccgtgcccacaagtggcctgaccacgaaggtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9500886 |
acggtggaggaagagcagtcacccgtgacacatgcaaacttgccgttgatatcattagcgcagagtgtccgtgcccacaagtggcctgaccacgaaggtg |
9500985 |
T |
|
| Q |
401 |
ggatcgcgatacttatggtact |
422 |
Q |
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||||||||||| |||||||||| |
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| T |
9500986 |
ggatcgcgataattatggtact |
9501007 |
T |
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