View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_21 (Length: 422)
Name: NF9751_low_21
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 211 - 387
Target Start/End: Original strand, 29851467 - 29851639
Alignment:
| Q |
211 |
cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccaccggacttgttatcacctct |
310 |
Q |
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| T |
29851467 |
cttgatgattagagttgctaatgggcacagagctccgacgc----cctgactatcaaaatcgcaatcctcgataccaccaccggacttattgtcatctcc |
29851562 |
T |
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| Q |
311 |
tccactacaaaagacgttctcttcattattaggtacgtttgttacggttaatcccattaaatcagaagtcaacaatt |
387 |
Q |
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| T |
29851563 |
tccactccaaaagacgttctcttcatcattaggtacgtttgttaccgttaatccctttaaatcagaagtcaacaatt |
29851639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 29870354 - 29870508
Alignment:
| Q |
211 |
cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccaccggacttgttatcacctct |
310 |
Q |
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| T |
29870354 |
cttgatgatcagagttgctaatgggcacgcagctctgacccacgccctcactatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcc |
29870453 |
T |
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| Q |
311 |
tccactacaaaagacgttctcttcattattaggtacgtttgttacggttaatccc |
365 |
Q |
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| T |
29870454 |
tccactccaaaagacgttctcttcatcattaggtacgtttgttacggttaatccc |
29870508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 364
Target Start/End: Complemental strand, 30244380 - 30244227
Alignment:
| Q |
211 |
cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccaccggacttgttatcacctct |
310 |
Q |
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| T |
30244380 |
cttgatgatcagactcgctaatgggcattgagctcctacccacaccctgataatcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcc |
30244281 |
T |
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| Q |
311 |
tccactacaaaagacgttctcttcattattaggtacgtttgttacggttaatcc |
364 |
Q |
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| T |
30244280 |
tccactccaaaagatgttctcttcatcattaggtacgtttgttccggttaatcc |
30244227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 30398558 - 30398639
Alignment:
| Q |
211 |
cttgatgatcagacttgctaatgggcacggagctcctacccacatcccgattatcaaaattgcaatcctcgataccgccacc |
292 |
Q |
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| T |
30398558 |
cttgatgatcagacttgctaatgggcacagagctccgacccatgccccgattgtcaaaatcgcaatcctcgatacccccacc |
30398639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 30481548 - 30481585
Alignment:
| Q |
26 |
gacccattgtcacttcctccactccaaaagacttcgtc |
63 |
Q |
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| T |
30481548 |
gacccattgtcacttcctccactccaaaagactgcgtc |
30481585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 30747842 - 30747880
Alignment:
| Q |
25 |
ggacccattgtcacttcctccactccaaaagacttcgtc |
63 |
Q |
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| T |
30747842 |
ggacccattgtcgcttcctccactctaaaagacttcgtc |
30747880 |
T |
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