View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_26 (Length: 396)
Name: NF9751_low_26
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 214 - 389
Target Start/End: Original strand, 40927562 - 40927720
Alignment:
| Q |
214 |
tctgggtaaagggctcgtgtagaagcatctccgttgttcttcatctcgttttcccattttatctgagatcgtccttccttttcaatcattttcccttcat |
313 |
Q |
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| T |
40927562 |
tctgggtaaagggctcgtgtaaaagcatctccgttgttcttcatctcgtttttcctttttatctgagatc-----------------attttcccttcat |
40927644 |
T |
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| Q |
314 |
ctcgtttttggttaaatcgctcaagcatctcagttgatcctctctctcgttttctgttaaaccatgcttcatctca |
389 |
Q |
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| T |
40927645 |
ctcatttttggttaaatcactcaagcatctcagttgatcctctctctcgttttctgttaaaccatgcttcatctca |
40927720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 40927450 - 40927497
Alignment:
| Q |
17 |
agaatccgctagtaattcactaattccgacagtatttcaaaaaacaca |
64 |
Q |
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| T |
40927450 |
agaatccgctagtaattcactaattccgacagtatttcaaaaaacaca |
40927497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 40927485 - 40927530
Alignment:
| Q |
126 |
ttcaaaaaacaaaataaggaggagctatccagaaacacacatctaatgt |
174 |
Q |
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| T |
40927485 |
ttcaaaaaacacaataagga---gctatccagaaacacacatctaatgt |
40927530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 48506588 - 48506486
Alignment:
| Q |
17 |
agaatccgctagtaattcactaattccgacagtatttcaaaaaacacatccgccggtgattctttaattccgccagtatccaattattagttcaagttat |
116 |
Q |
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| T |
48506588 |
agaatccgctagtaattcactaattccgacggtatttcaaaaaacacatccgccggtgattctttaattccgccagtacccaattattagttcaagttat |
48506489 |
T |
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| Q |
117 |
aat |
119 |
Q |
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||| |
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| T |
48506488 |
aat |
48506486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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