View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_27 (Length: 394)
Name: NF9751_low_27
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 6061285 - 6060907
Alignment:
| Q |
1 |
gcacatacatatcttcacaacttgtattgcttaaagcaaataattttgcaaatgaatttcgcattggtcgatcatgtcaaaattaaaccattgtacatta |
100 |
Q |
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| T |
6061285 |
gcacatacatatcttcacaacttgtattgcttaaagcaaataattttgcaaatgaatttcgcattggtcgatcatgtcaaaattaaaccattgtacatta |
6061186 |
T |
|
| Q |
101 |
aatggccttgcagattgaaaccttagcaagcaaaatcgtatgcataacagtacagaaatataactaacatcaaatagaagttgtttgaacttaatataca |
200 |
Q |
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| T |
6061185 |
aatggccttgcagattgaaaccttagcaagcaaaattgtatgcataacagtacagaaatataactaacatcaaatagaagttgtttgaacttaatataca |
6061086 |
T |
|
| Q |
201 |
agtcactcgctatttgataccatgcttgctacttgattcttcaagaacacctagattacagcgacttcttctattcctgattgctccatgcaaattcatc |
300 |
Q |
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| T |
6061085 |
agtcactcgctatttgataccatgcttgctacttgattcttcaagaacacctagattacagcgacttcttctattcctgtttgctccatgcaaattcatc |
6060986 |
T |
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| Q |
301 |
aaaagtcaaaatggttatcatcagaaaattcactcccatctgagaattcataatattcaaaatcattgtcagacaaaag |
379 |
Q |
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| T |
6060985 |
aaaagtcaaaatggttatcatcagaaaattcactcccatctgagaattcataatattcaaaatcattgtcagacaaaag |
6060907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 6047135 - 6047077
Alignment:
| Q |
321 |
tcagaaaattcactcccatctgagaattcataatattcaaaatcattgtcagacaaaag |
379 |
Q |
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| T |
6047135 |
tcagaaaattcactcccacctaagaattcatcatagtcataatcattgtcagataaaag |
6047077 |
T |
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