View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_29 (Length: 391)
Name: NF9751_low_29
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 5157120 - 5156762
Alignment:
| Q |
21 |
gcttatttgagcttatctctagtgtatgaaacgtgttacacatgaatgtatcacatcattgagctcaacaaataacagattataatctaaattgaattga |
120 |
Q |
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| T |
5157120 |
gcttatttgagcttatctctagtgtatgaaacgtgttacacatgaatgtatcacatcattgagctctacaaataacagattataatctaaattgaattga |
5157021 |
T |
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| Q |
121 |
aatttatacagtagtgaccaaaattcattttttgatacaaattaatctaaaccagtatgatcataaagaatataaaaacccatatgagtattgaaatgaa |
220 |
Q |
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| T |
5157020 |
aatttatacagtagtgaccaaaattcattttttaatacaaattaatctaaaccagtatgatcataaagaatataaaaacccatatgagtattgaaatgaa |
5156921 |
T |
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| Q |
221 |
aacccaaaatccg-tatnnnnnnnnnnnnnnncttttgtaggaatcgtacaattaagtttggtagaatattcaggacaaaagagaaagggataaaccttt |
319 |
Q |
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| T |
5156920 |
aaaccaaaatccgcaaaaaaaaaaaaaaaaaacttttgtaggaatcgtacaattaagtttggtagaatattcaggacaaaagagaaagggataaaccttt |
5156821 |
T |
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| Q |
320 |
tctgagcggcttcagcagctctagcacgcgcttcttcagaggctaatcgttcttcttct |
378 |
Q |
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| T |
5156820 |
tctgagcggcttcagcagctctagcacgcgcttcttcagaggctaatcgttcttcttct |
5156762 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 47563153 - 47563210
Alignment:
| Q |
317 |
ttttctgagcggcttcagcagctctagcacgcgcttcttcagaggctaatcgttcttc |
374 |
Q |
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| T |
47563153 |
ttttctgggcggcttcagcagctctagcgcgtgcttcttcagaggctaatctttcttc |
47563210 |
T |
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