View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_3 (Length: 672)
Name: NF9751_low_3
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Original strand, 7624068 - 7624523
Alignment:
| Q |
14 |
aaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtg |
113 |
Q |
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| T |
7624068 |
aaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtg |
7624167 |
T |
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| Q |
114 |
gaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggt |
213 |
Q |
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| T |
7624168 |
gaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccatagagacatggt |
7624267 |
T |
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| Q |
214 |
taatttatgttatgtatgtggctatggttatgaaatatgaaatatatgtgatgatgattaaggattaaggatataaataagttttgtacgtataacaaca |
313 |
Q |
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| T |
7624268 |
taatttatgttatgtatgtggctatggttatgaaatatgaaatatatgtgatgatgattaaggattaaggatataaataagttttgtacgtataacaaca |
7624367 |
T |
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| Q |
314 |
gcaatctatttgaatagggaaaaacaaattaactacttgacgttgtattgttgtcacattgagctaagcctcaacatgcttggtatttatagaggaaacg |
413 |
Q |
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| T |
7624368 |
gcaatctatttgaatagggaaaaacaaattaactacttgacgttgtattgttgtcacattgagctaagcctcaacatgcttggtatttatagaggaaacg |
7624467 |
T |
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| Q |
414 |
tttctctgactttacacggtttgttcattttggaacgtaggattgtccatgaagac |
469 |
Q |
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| T |
7624468 |
tttctctgactttacacggtttgttcatcttggaacgtaggattgtcaatgaagac |
7624523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 7659618 - 7659415
Alignment:
| Q |
13 |
caaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggt |
112 |
Q |
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| T |
7659618 |
caaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggt |
7659519 |
T |
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| Q |
113 |
ggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatgg |
212 |
Q |
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| T |
7659518 |
ggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatgg |
7659419 |
T |
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| Q |
213 |
ttaa |
216 |
Q |
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|||| |
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| T |
7659418 |
ttaa |
7659415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 520 - 648
Target Start/End: Original strand, 7624574 - 7624702
Alignment:
| Q |
520 |
gttcataatacatggaatgtgcttactttttatatcgggaaattttagtttagatgatggtacacacaactttgaaggacaagggacaacacctctttaa |
619 |
Q |
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| T |
7624574 |
gttcataatacatggaatgtgcttactttttatatcgggaaattttagtttagatgatgatacacacaactttgaaggacaagggacaacacctctttaa |
7624673 |
T |
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| Q |
620 |
gaatttgcaattgagttttacgttattac |
648 |
Q |
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| T |
7624674 |
gaatttgcaattgagttttacgttattac |
7624702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 7675245 - 7675047
Alignment:
| Q |
13 |
caaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggt |
112 |
Q |
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| T |
7675245 |
caaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggt |
7675146 |
T |
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| Q |
113 |
ggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
211 |
Q |
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| T |
7675145 |
gggagtggtagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
7675047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 7659350 - 7659281
Alignment:
| Q |
361 |
ttgttgtcacattgagctaagcctcaacatgcttggtatttatagaggaaacgtttctctgactttacacg |
431 |
Q |
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| T |
7659350 |
ttgttgtctcattaagctatgcctcaatatgcttggtatttata-aggaatcgtttctttgagtttacacg |
7659281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 7659283 - 7659235
Alignment:
| Q |
411 |
acgtttctctgactttacacggtttgttcattttggaacgtaggattgt |
459 |
Q |
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|||||||| ||||||||||||||||||||| |||| ||||| |||||| |
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| T |
7659283 |
acgtttctacgactttacacggtttgttcatattgggacgtacgattgt |
7659235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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