View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_36 (Length: 341)
Name: NF9751_low_36
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 16193034 - 16193350
Alignment:
| Q |
17 |
acttgaggcaccaattaagatatgtggtaactatttttcaacctcattttccttcnnnnnnnagaaaaataaataaata---cttataagtttggtttct |
113 |
Q |
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| T |
16193034 |
acttgaggcaccaattaagatatgtggtaactatttttcagccttcttt--ctt------ttaaaaaattaaataaataatacttataagtttggtttct |
16193125 |
T |
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| Q |
114 |
cgttagttagtagttttgacatgaaattttgttacattccaagggatataaggttggtttggtggttgcgtgcgcaagttaaaagggtagttagtga--- |
210 |
Q |
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| T |
16193126 |
cattagttagtagttttgacatgaaattttgttacattccatgggatataaggttggtttggtggttgcgtgcgcaagttaaaagggtagttagtgatat |
16193225 |
T |
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| Q |
211 |
----tatgaaggtcgggggtttgatccccactctcagcataatgctaaaattagtaatgatattaatattagccgtttcaactctctcaatcgtaaccta |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |
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| T |
16193226 |
gaactatgaaggccgggggtttgatccccactctcagcataatgctaaaattagtaataatattaatattagccgtttcaactctctaagtcgtaaccta |
16193325 |
T |
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| Q |
307 |
acatatgagcaattgctctcctatg |
331 |
Q |
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||||||||||||||||||||||||| |
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| T |
16193326 |
acatatgagcaattgctctcctatg |
16193350 |
T |
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