View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_38 (Length: 332)
Name: NF9751_low_38
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 53349878 - 53349571
Alignment:
| Q |
7 |
tttggtgttggggagtgtctattggtcctcttatacgtataattctattggaactccttattcttgatatgccacaagaaagcttatgaaggaagtaatc |
106 |
Q |
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| T |
53349878 |
tttgttgttggggagtgtctattggtcctcttatacgtataattctattggaactccttattcttgatatgccacaagaaagcttatgaaggaagtaatc |
53349779 |
T |
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| Q |
107 |
ctcaacatttttcattttcctgtgaccatttaaggtacattgtaaatcaacaaatgcataacttcatatttaagaataaaagtaatttgattgatgagtt |
206 |
Q |
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| T |
53349778 |
ctcatcatttttcattttcctgtgaccatttaaggtacattgtaaatcaacaaatgcataacttcatatttaagaataaaagtaatttgattgatgagtt |
53349679 |
T |
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| Q |
207 |
tgatttcatcttacctgtctagtatcaaccaagtagcctttaactttgtggctgattttaatgcaacagtcttaggtgaagatcccatggctatttctat |
306 |
Q |
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| T |
53349678 |
tgatttcatcttacctgtctagtatcaaccaagtagcctttaactttgtggctgattttaatgcaacagtcttaggtgaagatcccatggctatttctat |
53349579 |
T |
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| Q |
307 |
attaaatc |
314 |
Q |
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| T |
53349578 |
attaaatc |
53349571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 38444401 - 38444460
Alignment:
| Q |
183 |
taaaagtaatttgattgatgagtttgatttcatcttacctgtctagtatcaaccaagtag |
242 |
Q |
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| T |
38444401 |
taaatgtaatttcattgatcagtttgatttcatcttacctgtctagtatcaaccaagtag |
38444460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 38444286 - 38444336
Alignment:
| Q |
22 |
tgtctattggtcctcttatacgtataattctattggaactccttattcttg |
72 |
Q |
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| T |
38444286 |
tgtctattggtcctcttatacgcataattctattagaactccttattcttg |
38444336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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