View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_40 (Length: 323)
Name: NF9751_low_40
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 9333606 - 9333303
Alignment:
| Q |
7 |
ttggtgttttcctaaaattgaaataatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaac |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9333606 |
ttggtgttttcctaaaattgaaagaatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaac |
9333507 |
T |
|
| Q |
107 |
aattcatgggatcgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaa |
206 |
Q |
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|||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9333506 |
aattcatggggtcgatttcttcgtacttgtggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaa |
9333407 |
T |
|
| Q |
207 |
cttaataattaatgtt----nnnnnnnnncttactaattttatgatcattttatgttctactcattttttcctgttttcttcatttgtgttataggtggg |
302 |
Q |
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|||| ||||||| | | |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9333406 |
cttactaattaaaggtaaaaaaaaaaaaacttactaattttatgatcattttatgttgtactcatttttttctgttttcttcatttgtgttataggtggg |
9333307 |
T |
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| Q |
303 |
tcct |
306 |
Q |
| |
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|||| |
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| T |
9333306 |
tcct |
9333303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 22158541 - 22158243
Alignment:
| Q |
7 |
ttggtgttttcctaaaattgaaataatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaac |
106 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
22158541 |
ttggtgttttcctaaaattgaaagaatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcaggaataaac |
22158442 |
T |
|
| Q |
107 |
aattcatgggatcgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaa |
206 |
Q |
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| T |
22158441 |
aattcattaggttgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaaatgtggaaatacctcattatagagtatgaaggattaa |
22158342 |
T |
|
| Q |
207 |
cttaataattaatgttnnnnnnnnncttactaattttatgatcattttatgttctactcattttttcctgttttcttcatttgtgttataggtgggtcct |
306 |
Q |
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|||| ||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158341 |
cttactaattaacgtt-aaaaaaaacttactaattttattatcatattatgttctactcattttttcctgttttcttcatttgtgttataggtgggtcct |
22158243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 51861458 - 51861669
Alignment:
| Q |
7 |
ttggtgttttcctaaaattgaaataatattcaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcatggataaac |
106 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51861458 |
ttggtgttttcctaaaattgaaagaatatttaaatttcccaaatttttgtgcacataaattgaagaccacgtccattcacaacgtatatcagggataaac |
51861557 |
T |
|
| Q |
107 |
aattcatgggatcgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaa |
206 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
51861558 |
aattcatggagtcgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaaccgtggaaatacctcattatagagtatgaaggattaa |
51861657 |
T |
|
| Q |
207 |
cttaataattaa |
218 |
Q |
| |
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|||| ||||||| |
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| T |
51861658 |
cttactaattaa |
51861669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 51861698 - 51861773
Alignment:
| Q |
232 |
cttactaattttatgatcattttatgttctactca-ttttttcctgttttcttcatttgtgttataggtgggtcct |
306 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51861698 |
cttactaattttatgatcattttatgttctactcatttttttcctgttttcttcatttgtgttataggtgggtcct |
51861773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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