View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_46 (Length: 297)
Name: NF9751_low_46
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 3831408 - 3831162
Alignment:
| Q |
1 |
aaaactaagatgtttatgggttgagttaaacagcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaaca |
100 |
Q |
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| T |
3831408 |
aaaactaagatgtttatgggttgagttaaacggcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaaca |
3831309 |
T |
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| Q |
101 |
ccattttcaagggtatcaagaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3831308 |
ccattttcaagggtatcaagaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagaca |
3831209 |
T |
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| Q |
201 |
taaaagtttatgttgtttccctttactttgctatccttttctagttc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3831208 |
taaaagtttatgttgtttccctttactttgctatccttttccagttc |
3831162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 3837659 - 3837557
Alignment:
| Q |
10 |
atgtttatgggttgagttaaacagcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttca |
109 |
Q |
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|||||||| ||||||||||||| | || |||||||| |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||||| |||| | |
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| T |
3837659 |
atgtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacacctttttta |
3837560 |
T |
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| Q |
110 |
agg |
112 |
Q |
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||| |
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| T |
3837559 |
agg |
3837557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 3837514 - 3837436
Alignment:
| Q |
161 |
ccgagttttatccttcttttggtaccaaggtaatcagacataaaagtttatgttgtttccctttactttgctatccttt |
239 |
Q |
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|||||| || |||||||| | ||| |||||||| |||||||||| |||||||| |||| |||| |||||||||||||| |
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| T |
3837514 |
ccgagtcttctccttcttccgttacaaaggtaataagacataaaaatttatgttctttctcttttctttgctatccttt |
3837436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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