View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9751_low_48 (Length: 295)

Name: NF9751_low_48
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9751_low_48
NF9751_low_48
[»] chr2 (9 HSPs)
chr2 (18-159)||(3575987-3576128)
chr2 (18-159)||(3576424-3576565)
chr2 (205-283)||(3576644-3576722)
chr2 (205-283)||(12413274-12413352)
chr2 (205-283)||(12425334-12425412)
chr2 (205-279)||(3576224-3576298)
chr2 (205-279)||(3575836-3575910)
chr2 (111-159)||(12413431-12413479)
chr2 (111-159)||(12425491-12425539)
[»] scaffold0595 (1 HSPs)
scaffold0595 (205-283)||(4307-4384)
[»] chr6 (2 HSPs)
chr6 (221-283)||(14767003-14767065)
chr6 (241-283)||(14763232-14763274)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 3576128 - 3575987
Alignment:
Q  18 ggtattaacacaaattactatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcatggtatctgaaattgattagaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  3576128 ggtattaacacaaattactatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcacggtacctgaaattgattagaa 3576029  T
Q  118 gcaatatttggagtgataattaaatcgagtaacatcctttca 159  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  3576028 gcaatatttggagtgataattgaatcgagtaacatcctttca 3575987  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 3576424 - 3576565
Alignment:
Q  18 ggtattaacacaaattactatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcatggtatctgaaattgattagaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  3576424 ggtattaacacaaattactatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcacggtaccagaaattgattagaa 3576523  T
Q  118 gcaatatttggagtgataattaaatcgagtaacatcctttca 159  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3576524 gcaatatttggagtgataattaaatcgagtaacatcctttca 3576565  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 3576644 - 3576722
Alignment:
Q  205 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacaacacatgtggtactgcaccta 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3576644 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaatagcaccaacaacacatgtggtactgcaccta 3576722  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 12413352 - 12413274
Alignment:
Q  205 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacaacacatgtggtactgcaccta 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12413352 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacatcaccaacaacacatgtggtactgcaccta 12413274  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 12425412 - 12425334
Alignment:
Q  205 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacaacacatgtggtactgcaccta 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12425412 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacatcaccaacaacacatgtggtactgcaccta 12425334  T

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Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 3576298 - 3576224
Alignment:
Q  205 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacaacacatgtggtactgca 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3576298 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacatcacatgtggtactgca 3576224  T

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Target: chr2; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 3575910 - 3575836
Alignment:
Q  205 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacaacacatgtggtactgca 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  3575910 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacatcacatgtgatactgca 3575836  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 12413479 - 12413431
Alignment:
Q  111 attagaagcaatatttggagtgataattaaatcgagtaacatcctttca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12413479 attagaagcaatatttggagtgataattaaatcgagtaacatcctttca 12413431  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 12425539 - 12425491
Alignment:
Q  111 attagaagcaatatttggagtgataattaaatcgagtaacatcctttca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12425539 attagaagcaatatttggagtgataattaaatcgagtaacatcctttca 12425491  T

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Target: scaffold0595 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 4384 - 4307
Alignment:
Q  205 gtttttctatttaaaaaatatacacgtgtcaagttctaataggagaacagcaccaacaacacatgtggtactgcaccta 283  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  4384 gtttttctatttaaaaa-tatacacgtgtcaagttttaataagagaactgcaccaacaacacatgtggtactgcaccta 4307  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 14767003 - 14767065
Alignment:
Q  221 aatatacacgtgtcaagttctaataggagaacagcaccaacaacacatgtggtactgcaccta 283  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  14767003 aatatacacgtgtcatgttgtaataggagaacatcaccaacaacacatgtggtattgcaccta 14767065  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 14763274 - 14763232
Alignment:
Q  241 taataggagaacagcaccaacaacacatgtggtactgcaccta 283  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  14763274 taataggagaacaacaccaacaacacatgtggtattgcaccta 14763232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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