View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9751_low_49 (Length: 292)

Name: NF9751_low_49
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9751_low_49
NF9751_low_49
[»] chr5 (25 HSPs)
chr5 (92-260)||(30481979-30482148)
chr5 (92-261)||(30339811-30339981)
chr5 (94-244)||(30398663-30398814)
chr5 (101-260)||(30243659-30243819)
chr5 (94-244)||(30434471-30434622)
chr5 (92-240)||(29870833-29870982)
chr5 (99-244)||(30748297-30748443)
chr5 (93-253)||(30058936-30059097)
chr5 (76-244)||(29851930-29852099)
chr5 (78-170)||(17419269-17419361)
chr5 (138-241)||(4380357-4380461)
chr5 (87-152)||(30678629-30678694)
chr5 (3-74)||(29870580-29870654)
chr5 (2-80)||(30714707-30714789)
chr5 (2-71)||(30678918-30678987)
chr5 (102-169)||(29710349-29710416)
chr5 (106-244)||(30205102-30205241)
chr5 (107-160)||(30202743-30202796)
chr5 (193-261)||(30678526-30678595)
chr5 (1-35)||(30340226-30340260)
chr5 (1-35)||(30481726-30481760)
chr5 (1-35)||(30748025-30748059)
chr5 (1-30)||(30244072-30244101)
chr5 (1-30)||(30434200-30434229)
chr5 (200-244)||(30482160-30482204)
[»] chr7 (1 HSPs)
chr7 (96-244)||(26705914-26706063)
[»] chr4 (5 HSPs)
chr4 (101-269)||(20298025-20298194)
chr4 (3-74)||(20298365-20298434)
chr4 (97-154)||(13615444-13615501)
chr4 (200-244)||(20297978-20298022)
chr4 (102-170)||(20304007-20304074)
[»] chr1 (1 HSPs)
chr1 (96-154)||(7097997-7098055)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 92 - 260
Target Start/End: Original strand, 30481979 - 30482148
Alignment:
Q  92 taaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatc 191  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || || |  ||||||||| |    
T  30481979 taaactgtatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcattcccaaattgtcagaac 30482078  T
Q  192 ctcaagag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttacagctataaatctttaga 260  Q
    |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  30482079 ctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatcctttacagctataaatctgtaga 30482148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 92 - 261
Target Start/End: Complemental strand, 30339981 - 30339811
Alignment:
Q  92 taaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatc 191  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |  ||| ||||||      
T  30339981 taaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcagaag 30339882  T
Q  192 ctcaagag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttacagctataaatctttagag 261  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||||    
T  30339881 ctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacagctataaatctgtagag 30339811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 30398663 - 30398814
Alignment:
Q  94 aactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcct 193  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||  |||||||||| |||    
T  30398663 aactgtatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcagaacct 30398762  T
Q  194 caagag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
    |||||| ||||||||||| |||||||||||| || ||||||||| |||||||    
T  30398763 caagagaagtgaggtgtctaataccctccggaaagcatcgcaattctttaca 30398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 30243819 - 30243659
Alignment:
Q  101 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |   ||  ||| | |||||||||     
T  30243819 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagaga 30243720  T
Q  200 agtgaggtgtcgaataccctccggtaatcatcgcaatcctttacagctataaatctttaga 260  Q
    |||||||||||||||||||||||| || ||||||||||||| ||| |||| ||||||||||    
T  30243719 agtgaggtgtcgaataccctccggcaagcatcgcaatccttcacatctatgaatctttaga 30243659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 30434471 - 30434622
Alignment:
Q  94 aactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcct 193  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||  ||| | ||||  ||    
T  30434471 aactctattcttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagct 30434570  T
Q  194 caagag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
    |||||| |||||||||||||||||||||||| || |||||||||||| ||||    
T  30434571 caagagaagtgaggtgtcgaataccctccggcaagcatcgcaatcctctaca 30434622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 29870833 - 29870982
Alignment:
Q  92 taaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatc 191  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |  | |||| ||||      
T  29870833 taaactgtattattggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccctcaattgccagaag 29870932  T
Q  192 ctcaagag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctt 240  Q
    |||||| | |||||||||||||||||||||||| || |||||||||||||    
T  29870933 ctcaagtgaagtgaggtgtcgaataccctccggcaagcatcgcaatcctt 29870982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 30748297 - 30748443
Alignment:
Q  99 tatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaaga 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||  |||    |||  |||||||    
T  30748297 tatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcaatcaatgatatcaagaagctcaaga 30748396  T
Q  199 g-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
    | |||||||||||||||||||||||| || |||||||||||| ||||    
T  30748397 gaagtgaggtgtcgaataccctccggcaagcatcgcaatcctctaca 30748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 93 - 253
Target Start/End: Original strand, 30058936 - 30059097
Alignment:
Q  93 aaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcc 192  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||| ||||| ||||||| | ||| ||  ||| ||||||  |    
T  30058936 aaactgtatttttggaatatgagatatcttgtcccaatcctcccctgttcgcttcttgcatcgttcctttaatgttcggcaaccaatgatagtcagaagc 30059035  T
Q  193 tcaagag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttacagctataaat 253  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||||    
T  30059036 tcaagagaagtgaggtgtcgaataccctccggcaaacatcgcaatccttcacagctataaat 30059097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 29851930 - 29852099
Alignment:
Q  76 tctgcttcttaaaacataaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaat 175  Q
    |||||||||||| |  |||||| ||| ||||||||||||| |||||||||||||||||| | ||||||| ||||||||| ||||||||||||||| ||||    
T  29851930 tctgcttcttaatagttaaactgtatatttggaatatgagatatcttgtcccaatcctcacatgttcccactttgcatcgttcctctaatgttgggcaat 29852029  T
Q  176 caccgattgtcagatcctcaagag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
         |||| ||||  |||||||| ||||||||||| |||||||||||| || |||| ||||||||||||    
T  29852030 ttttaattgacagaagctcaagagaagtgaggtgtccaataccctccggcaagcatctcaatcctttaca 29852099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 17419361 - 17419269
Alignment:
Q  78 tgcttcttaaaacataaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttgg 170  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||    
T  17419361 tgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccctccttgcatcgttcctctaatgttgg 17419269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 4380357 - 4380461
Alignment:
Q  138 tgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag-agtgaggtgtcgaataccctccggtaatcatcgcaat 236  Q
    ||||||||||||||||| ||||||||||||||| ||| ||  |||| ||||| ||||||||| |||||||||||||||||||||||| || |||||||||    
T  4380357 tgttccctctttgcatcgttcctctaatgttgggcaaccaatgattctcagaacctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaat 4380456  T
Q  237 ccttt 241  Q
    |||||    
T  4380457 ccttt 4380461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 30678694 - 30678629
Alignment:
Q  87 aaacataaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgca 152  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30678694 aaacttaaactgtatttttggaatatgagctatcttgtcccaatcctcccccattccctctttgca 30678629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 29870580 - 29870654
Alignment:
Q  3 atgatgaagaaaattacctgaattagaacattta---tgcttaggttgaagagtaaaatatctttcatgtactct 74  Q
    ||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaacatttatccttcttaggatgaacagtaaaatatctttcatgtactct 29870654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 30714789 - 30714707
Alignment:
Q  2 tatgatgaagaaaattacctgaattagaacatttatgcttaggttg----aagagtaaaatatctttcatgtactctttctgc 80  Q
    ||||||||||||||||||||||||||||||| || | |||||||||    |  ||||||||||||||||||||||||||||||    
T  30714789 tatgatgaagaaaattacctgaattagaacaattgtccttaggttggttgagtagtaaaatatctttcatgtactctttctgc 30714707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 30678987 - 30678918
Alignment:
Q  2 tatgatgaagaaaattacctgaattagaacatttatgcttaggttgaagagtaaaatatctttcatgtac 71  Q
    ||||||||||||||||||| ||||||||||| || | | ||||||||  |||||||||||||||||||||    
T  30678987 tatgatgaagaaaattaccagaattagaacaattgtccgtaggttgagcagtaaaatatctttcatgtac 30678918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 29710416 - 29710349
Alignment:
Q  102 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttg 169  Q
    |||||||| ||| |||||||||||| ||||||||| || |||||| ||||||| ||||||||||||||    
T  29710416 ttttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcatcgttcctctaatgttg 29710349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 30205102 - 30205241
Alignment:
Q  106 ggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag-agtga 204  Q
    |||||||| | |||||||| ||| ||||| ||||||||||| |||||||  || |||| |||||| ||| |||  |||||||||  ||| |||| |||||    
T  30205102 ggaatatgcgatatcttgtaccagtcctctcctgttccctccttgcatcgctcttctagtgttggacaaccacgaattgtcagaagctccagagaagtga 30205201  T
Q  205 ggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
    | ||||||||||| |||||||| |||| || | |||||||    
T  30205202 gatgtcgaataccttccggtaagcatctcagttctttaca 30205241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 30202743 - 30202796
Alignment:
Q  107 gaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcct 160  Q
    ||||||| |||||||||||||| | ||||||||||||||| ||||||| |||||    
T  30202743 gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttcct 30202796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 30678595 - 30678526
Alignment:
Q  193 tcaagaga-gtgaggtgtcgaataccctccggtaatcatcgcaatcctttacagctataaatctttagag 261  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||| |||  ||  |||||||||||    
T  30678595 tcaagagatgtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaattacgaatctttagag 30678526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30340260 - 30340226
Alignment:
Q  1 ctatgatgaagaaaattacctgaattagaacattt 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacattt 30340226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30481726 - 30481760
Alignment:
Q  1 ctatgatgaagaaaattacctgaattagaacattt 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacattt 30481760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30748025 - 30748059
Alignment:
Q  1 ctatgatgaagaaaattacctgaattagaacattt 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacattt 30748059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 30244101 - 30244072
Alignment:
Q  1 ctatgatgaagaaaattacctgaattagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  30244101 ctatgatgaagaaaattacctgaattagaa 30244072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30434200 - 30434229
Alignment:
Q  1 ctatgatgaagaaaattacctgaattagaa 30  Q
    ||||||||||||||||||||||||||||||    
T  30434200 ctatgatgaagaaaattacctgaattagaa 30434229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 30482160 - 30482204
Alignment:
Q  200 agtgaggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
    |||||||||||||||||||||||| || |||| ||||||| ||||    
T  30482160 agtgaggtgtcgaataccctccggcaagcatctcaatcctctaca 30482204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 26705914 - 26706063
Alignment:
Q  96 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctca 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||   |  ||| |||||  ||||    
T  26705914 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactca 26706013  T
Q  196 agag-agtgaggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
    |||| ||||||||||||||||||||| || || ||||||| |||||||||    
T  26706014 agagaagtgaggtgtcgaataccctctggcaagcatcgcattcctttaca 26706063  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 269
Target Start/End: Complemental strand, 20298194 - 20298025
Alignment:
Q  101 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttggccaatcaccgattgtcagatcctcaagag- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || |||||| || |||| |||||| ||||||  ||||||||     
T  20298194 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaagaga 20298095  T
Q  200 agtgaggtgtcgaataccctccggtaatcatcgcaatcctttacagctataaatctttagaggcctaagg 269  Q
    |||||||||| |||| || || || || ||| ||||||||| ||| |   |||||||||||| |||||||    
T  20298094 agtgaggtgttgaatgccttctggcaagcattgcaatccttcacaaccccaaatctttagagtcctaagg 20298025  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 20298434 - 20298365
Alignment:
Q  3 atgatgaagaaaattacctgaattagaacatttatgcttaggttgaagagtaaaatatctttcatgtactct 74  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||||| |||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaacatttatcct--ggttgaacagtaaaatatatttcatgtactct 20298365  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 13615444 - 13615501
Alignment:
Q  97 tttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatc 154  Q
    |||| |||||||||||| |||||||||||||| || |||| ||||||||| |||||||    
T  13615444 tttagttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatc 13615501  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 20298022 - 20297978
Alignment:
Q  200 agtgaggtgtcgaataccctccggtaatcatcgcaatcctttaca 244  Q
    |||||||||| ||||||||||||| || ||| |||||||||||||    
T  20298022 agtgaggtgttgaataccctccggcaagcattgcaatcctttaca 20297978  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 20304074 - 20304007
Alignment:
Q  102 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatctttcctctaatgttgg 170  Q
    |||||||||||| |||||||||| ||||||||| |||||||||   ||||| | ||||| |||||||||    
T  20304074 ttttggaatatgcgctatcttgt-ccaatcctcgcctgttcccgtcttgcaccgttcctttaatgttgg 20304007  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 7097997 - 7098055
Alignment:
Q  96 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatc 154  Q
    ||||| |||||||||||| |||||||||||||| || |||||||||||||| |||||||    
T  7097997 ctttagttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatc 7098055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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