View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9751_low_5 (Length: 581)

Name: NF9751_low_5
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9751_low_5
NF9751_low_5
[»] chr2 (1 HSPs)
chr2 (4-566)||(33652814-33653376)
[»] chr6 (4 HSPs)
chr6 (4-184)||(2626379-2626559)
chr6 (5-184)||(22977283-22977462)
chr6 (5-184)||(23810940-23811119)
chr6 (4-124)||(34325111-34325231)
[»] chr8 (4 HSPs)
chr8 (4-184)||(45287965-45288146)
chr8 (4-184)||(3753064-3753245)
chr8 (28-184)||(19251792-19251949)
chr8 (28-184)||(19324976-19325133)
[»] chr7 (1 HSPs)
chr7 (4-184)||(42921847-42922028)
[»] chr1 (1 HSPs)
chr1 (4-184)||(47388727-47388908)


Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 4 - 566
Target Start/End: Original strand, 33652814 - 33653376
Alignment:
Q  4 ggaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 103  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33652814 ggaggagtagagatttgaatctctgagactttaggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 33652913  T
Q  104 gtttgttaggtattgcagctgtagaatttgtgatcatgtcagtattatgtcgaggttggttattatcgccatgaagtgaaggtaacttgtatgatacttc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33652914 gtttgttaggtattgcagctgtagaatttgtgatcatgtcagtattatgtcgaggttggttattatcaccatgaagtgaaggtaacttgtatgatacttc 33653013  T
Q  204 ttcatttctagactgacttcctctcattgcatgatcatgatttgacaaagacgagtctgtgcgaagttggccaatattttcatgcatgatttctctttct 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33653014 ttcatttctagactgacttcctctcattgcatgatcatgatttgacaaagacgagtctgtgcgaagttggccaatattttcatgcatgatttctctttct 33653113  T
Q  304 gaagtcaaatgtcttaaatgtttctccggtgatgccttggtcaacactccaatgtctttcaaaccatgattgttgttgctttgttcaacagcttctgttg 403  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33653114 gaagtcaaatgtcttaaatgtttctccggtgatgccttggtcaatactccaatgtctttcaaaccatgattattgttgctttgttcaacagcttctgttg 33653213  T
Q  404 catcaggtttgacaggcaaccctactgaggttttgatttcattcttagtctttgtgccactcttggaaagaactttcccttttgttttatgtgcgtcttc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33653214 catcaggtttgacaggcaaccctactgaggttttgatttcattcttagtctttgtgccactcttggaaagaactttcccttttgttttatgtgcgtcttc 33653313  T
Q  504 tttatgatttgaagatttcacttgtttttggagctgcttcttctgcaaaggtaccagcttatt 566  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33653314 tttatgatttgaagatttcacttctttttggagctgcttcttctgcaaaggtaccagcttatt 33653376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 2626379 - 2626559
Alignment:
Q  4 ggaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 103  Q
    ||||||| |||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2626379 ggaggagtagagatttgaatctatgagactttaggtgaggtaacattactttcttctatttcctgattcaccttagaattcacagcagtatatattaatg 2626478  T
Q  104 gtttgttaggtattgcagctgtagaatttgtgatcatgtcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||||| |||| ||||||||||||| ||| |||||||||    
T  2626479 gtttgttaggtaatgcagctgtagaagttgtgatcatgttagtattatttcgaagttggttattatcaccacgaagtgaag 2626559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 22977283 - 22977462
Alignment:
Q  5 gaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatgg 104  Q
    |||||| |||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22977283 gaggagtagagatttgaatctatgagactttaggtgaggtaacattactttcttctatttcctgattcaccttagaattcacagcagtatatattaatgg 22977382  T
Q  105 tttgttaggtattgcagctgtagaatttgtgatcatgtcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    ||||||||||| |||| |||||||| |||||||||||| |||||||| |||| ||||||||||||| ||| |||||||||    
T  22977383 tttgttaggtaatgcatctgtagaagttgtgatcatgttagtattatttcgaagttggttattatcaccacgaagtgaag 22977462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 23811119 - 23810940
Alignment:
Q  5 gaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatgg 104  Q
    |||||| |||||||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23811119 gaggagtagagatttgaatctatgagactttaggtgaggtaacattactttcttctatttcctgattcaccttagaattcacagcagtatatattaatgg 23811020  T
Q  105 tttgttaggtattgcagctgtagaatttgtgatcatgtcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    ||||||||||| |||| |||||||| |||||||||||| |||||||| |||| ||||||||||||| ||| |||||||||    
T  23811019 tttgttaggtaatgcaactgtagaagttgtgatcatgttagtattatttcgaagttggttattatcaccacgaagtgaag 23810940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 34325231 - 34325111
Alignment:
Q  4 ggaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 103  Q
    ||||||| |||||||||||||||| ||||||| ||||||||| |||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  34325231 ggaggagtagagatttgaatctctcagactttaggtgaggtaacattactttcttctattttctgattcaccttagaattcacaacagtatatattaatg 34325132  T
Q  104 gtttgttaggtattgcagctg 124  Q
    |||||||||||| ||||||||    
T  34325131 gtttgttaggtaatgcagctg 34325111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 45287965 - 45288146
Alignment:
Q  4 ggaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 103  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  45287965 ggaggagtagagatttgaatctctgagactttaggtgaggtaacattactttcttctatttcctgattcaccttagaattcacagcagtatatattgatg 45288064  T
Q  104 gtttgttaggtattgcagctgtagaatttgtgatcatg-tcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    |||||||||||| ||||||||||||| ||||||||||| | |||||||| |||| ||||||||||||| ||| |||||||||    
T  45288065 gtttgttaggtaatgcagctgtagaagttgtgatcatgtttagtattatttcgaagttggttattatcaccacgaagtgaag 45288146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 3753245 - 3753064
Alignment:
Q  4 ggaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 103  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  3753245 ggaggagtagatatttgaatctctgagactttaggtgaggtaacattactttcttctattttctgattcaccttagaattcacagcagtatatattaatg 3753146  T
Q  104 gtttgttaggtattgcagctgtagaatttgtgatcatg-tcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    |||||||||||| | |||| |||||| ||||||||||| | |||||||| |||| ||||||||||||| ||| | |||||||    
T  3753145 gtttgttaggtaatacagcagtagaagttgtgatcatgtttagtattatttcgaagttggttattatcaccacggagtgaag 3753064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 19251949 - 19251792
Alignment:
Q  28 gagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtag 127  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||| ||||||    
T  19251949 gagactttaggtgaggtaacattactttcttctatttcctgattcaccttagaattcacaacggtatatattaatggtttgttaggtaatgcaactgtag 19251850  T
Q  128 aatttgtgatcatg-tcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    || ||||||||||| | |||||||| |||| ||||||||||||| ||| |||||||||    
T  19251849 aagttgtgatcatgtttagtattatttcgaagttggttattatcaccacgaagtgaag 19251792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 19325133 - 19324976
Alignment:
Q  28 gagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatggtttgttaggtattgcagctgtag 127  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||| ||||||    
T  19325133 gagactttaggtgaggtaacattactttcttctatttcctgattcaccttagaattcacaacggtatatattaatggtttgttaggtaatgcaactgtag 19325034  T
Q  128 aatttgtgatcatg-tcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    || ||||||||||| | |||||||| |||| ||||||||||||| ||| |||||||||    
T  19325033 aagttgtgatcatgtttagtattatttcgaagttggttattatcaccacgaagtgaag 19324976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 42922028 - 42921847
Alignment:
Q  4 ggaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 103  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42922028 ggaggagtagagatttgaatctctgagactttaggtgaggtaacattactttcttctatttcctgattcaccttagaattcacagcagtatatattaatg 42921929  T
Q  104 gtttgttaggtattgcagctgtagaatttgtgatcatg-tcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    |||||||||||| ||||||||||||| ||||||||||| | |||||||| || | ||||||||||||| ||| |||||||||    
T  42921928 gtttgttaggtaatgcagctgtagaagttgtgatcatgtttagtattatttcaaagttggttattatcaccacgaagtgaag 42921847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 47388727 - 47388908
Alignment:
Q  4 ggaggagcagagatttgaatctctgagactttcggtgaggtagcattgctttcttctatttcctgattcacctttgaattcacagcagtatatattaatg 103  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47388727 ggaggagtagagatttgaatctctgagactttaggtgaggtaacatttctttcttctatttcctgattcaccttagaattcacagcagtatatattaatg 47388826  T
Q  104 gtttgttaggtattgcagctgtagaatttgtgatcatg-tcagtattatgtcgaggttggttattatcgccatgaagtgaag 184  Q
    |||||||||||| ||||||||| ||| ||||||||||| | |||||||| |||| |||||||||||||  || |||||||||    
T  47388827 gtttgttaggtaatgcagctgttgaagttgtgatcatgtttagtattatttcgaagttggttattatcaacacgaagtgaag 47388908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University