View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_52 (Length: 287)
Name: NF9751_low_52
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 33353115 - 33352881
Alignment:
| Q |
1 |
agaaaaaacataaagttgaagttactttataatttactttctcttgttatttatttccaaggcct-attaagaaaaatgattttaagagtaaacaaaaac |
99 |
Q |
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| T |
33353115 |
agaaaaaacataaagttga---tactaaataatttattttctgttgttatttacttctatgacttcatttagaaaaatgattttaagagtaaacaaaaac |
33353019 |
T |
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| Q |
100 |
cattcataaaatgcaattaaacaacattcctcaatatcattatcatt-tagga--aaaacaaagttgttattttcaacacccatcaataccattatcatt |
196 |
Q |
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| T |
33353018 |
tattcatacaatgcaattaaccaaccttcctcaatatcattatcattcgatgaagaaaaaaaagtttttattttcaatgctcatcaatatcattatcatt |
33352919 |
T |
|
| Q |
197 |
tcaagcaaaacaaagaagtcatcacaattaagttcaagg |
235 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||| |
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| T |
33352918 |
tcaagc-aaacatagaagtcatcacaactaagttcaagg |
33352881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33352623 - 33352512
Alignment:
| Q |
1 |
agaaaaaacataaagttgaagttactttataatttactttctcttgttatttatttccaaggcctattaagaaaaatgattttaagagtaaacaaaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |
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| T |
33352623 |
agaaaaaacataaagttgaagttactttataatttactttatgttgttatttatttccaagacctatttagaaaaatgattttaagagtaaactaaaacc |
33352524 |
T |
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| Q |
101 |
attcataaaatg |
112 |
Q |
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||| ||| |||| |
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| T |
33352523 |
atttatacaatg |
33352512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 3961217 - 3961253
Alignment:
| Q |
177 |
ccatcaataccattatcatttcaagcaaaacaaagaa |
213 |
Q |
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| T |
3961217 |
ccatcaatatcattatcatttcaagtaaaacaaagaa |
3961253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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