View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_54 (Length: 272)
Name: NF9751_low_54
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_54 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 21004741 - 21004984
Alignment:
| Q |
11 |
cagagaccttaagacttgtggatcattataaagccttaacaatgctctttgaagttgtttaaactttaatgnnnnnnnnaagatgccaaatcaacctacc |
110 |
Q |
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| T |
21004741 |
cagaaaccttaagacttgtggatcattataaagccttaacaatgctctttgaagttgtttaaactttaatgttttttt-aagatgccaaatcagcctacc |
21004839 |
T |
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| Q |
111 |
aaaattgacaccgcagaaaatcgaacttgaaaccttcaggagaagcacactccgagatcctaagacttaatgttaaaccaactaacaaccatgttaacgc |
210 |
Q |
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| T |
21004840 |
aaaattgacaccggagagaatcgaactggga-ccttcaggagaagcacactcccagatcctaagacttaatgttaaaccaactaacaaccatgttaacgc |
21004938 |
T |
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| Q |
211 |
tttggattatctttaccgatgtataaagatgtaacaaccatgttaa |
256 |
Q |
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| T |
21004939 |
tttggattatctttaccgatatataaagatgtaacaaccatgttaa |
21004984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 21004970 - 21005033
Alignment:
| Q |
193 |
taacaaccatgttaacgctttggattatctttaccgatgtataaagatgtaacaaccatgttaa |
256 |
Q |
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| T |
21004970 |
taacaaccatgttaacgtgttggattgtccgtgccgatgtataaagatgtaacaaccatgttaa |
21005033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 21005019 - 21005067
Alignment:
| Q |
193 |
taacaaccatgttaacgctttggattatctttaccgatgtataaagatg |
241 |
Q |
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| T |
21005019 |
taacaaccatgttaacaccttggattatcttcgccgatgtataaagatg |
21005067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 28841506 - 28841455
Alignment:
| Q |
112 |
aaattgacaccgcagaaaatcgaacttgaaaccttcaggagaagcacactcc |
163 |
Q |
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| T |
28841506 |
aaattgacaccggagagaatcgaacttgagaccttgaggaggagcacactcc |
28841455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 16230 - 16266
Alignment:
| Q |
171 |
taagacttaatgttaaaccaactaacaaccatgttaa |
207 |
Q |
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| T |
16230 |
taagacttaatgttaaaccaactaacaaccatgttaa |
16266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 44810510 - 44810474
Alignment:
| Q |
171 |
taagacttaatgttaaaccaactaacaaccatgttaa |
207 |
Q |
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| T |
44810510 |
taagacttaatgttaaaccaactaataaccatgttaa |
44810474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 44810546 - 44810510
Alignment:
| Q |
40 |
aaagccttaacaatgctctttgaagttgtttaaactt |
76 |
Q |
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| T |
44810546 |
aaagccttaaccatgctcttggaagttgtttaaactt |
44810510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 32558313 - 32558262
Alignment:
| Q |
112 |
aaattgacaccgcagaaaatcgaacttgaaaccttcaggagaagcacactcc |
163 |
Q |
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| T |
32558313 |
aaattgacaccaaagaaaatcgaacttgaaaccttaaagagaagcatactcc |
32558262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 37258350 - 37258408
Alignment:
| Q |
112 |
aaattgacaccgcagaaaatcgaacttgaaaccttcaggagaagcacactccgagatcc |
170 |
Q |
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| T |
37258350 |
aaattgacaccagagagaatcgaacctgaaaccttgaggaggagcacactcctagatcc |
37258408 |
T |
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