View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_56 (Length: 261)
Name: NF9751_low_56
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_56 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 7808897 - 7809115
Alignment:
| Q |
23 |
tatcatttttaacataaatgattaaatttgtacaaaacaaaagaactagattgtacaaaacaaacttactcctttacatctctaatcaaactgagaatta |
122 |
Q |
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| T |
7808897 |
tatcatttttaacataaatgattaaatttgtacaaaacaaaagaactagattgtacaaaacaaacttactcctttaca--gctaatcaaactgagaatta |
7808994 |
T |
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| Q |
123 |
gattggtaattatataaaacttcctgttgattgatactctttttacta-------------tgcatttgtggaacctatcataatgccatgaattttatt |
209 |
Q |
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| T |
7808995 |
gattggtagttatataaaactccctattgattgatactttttttactacttgatagaaccgtgcatttgtggaacctatcataatgccatgaattttatt |
7809094 |
T |
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| Q |
210 |
tctttggcgaaaaatataaaa |
230 |
Q |
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|||||||||||||||| |||| |
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| T |
7809095 |
tctttggcgaaaaataaaaaa |
7809115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 4781248 - 4781208
Alignment:
| Q |
221 |
aaatataaaaggttaattttgggaaagcagtaaaaggtttt |
261 |
Q |
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| T |
4781248 |
aaatataaaaggttaagtttgggaaagcagtaaaaggtttt |
4781208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 4771890 - 4771850
Alignment:
| Q |
221 |
aaatataaaaggttaattttgggaaagcagtaaaaggtttt |
261 |
Q |
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| T |
4771890 |
aaatataaaaggttaagtttgggaaagaagtaaaaggtttt |
4771850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 4776618 - 4776578
Alignment:
| Q |
221 |
aaatataaaaggttaattttgggaaagcagtaaaaggtttt |
261 |
Q |
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| T |
4776618 |
aaatataaaagattaagtttgggaaagcagtaaaaggtttt |
4776578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 356287 - 356234
Alignment:
| Q |
118 |
aattagattggtaattatataaaacttcctgttgattgatactctttttactat |
171 |
Q |
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| T |
356287 |
aattagattggtaatcatataaaattccctgtagatcaatactctttttactat |
356234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 5048510 - 5048550
Alignment:
| Q |
221 |
aaatataaaaggttaattttgggaaagcagtaaaaggtttt |
261 |
Q |
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| T |
5048510 |
aaatataaaaggttgagtttgggaaagcaataaaaggtttt |
5048550 |
T |
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