View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_59 (Length: 254)
Name: NF9751_low_59
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 107 - 253
Target Start/End: Original strand, 20597615 - 20597761
Alignment:
| Q |
107 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttca |
206 |
Q |
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| T |
20597615 |
ttagtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttca |
20597714 |
T |
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| Q |
207 |
tgtcaacctgcaaagatggtcttgtgactgcaggaaatggctactaa |
253 |
Q |
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| T |
20597715 |
tgtcaacctgcaaagatggtcttgtgactgcaggaaatggctactaa |
20597761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 20597432 - 20597514
Alignment:
| Q |
15 |
ggacatcagagtgtacttgatggagagatgggaagcaaacaggcagaaagctgcaatgttgaaggatggtgtgttacccaaca |
97 |
Q |
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| T |
20597432 |
ggacatcagagtgtacctgatggagagatgggaagcaaacaggcagaaagctgcaatgttggaggatggtgtgttacccaaca |
20597514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 109 - 253
Target Start/End: Original strand, 8698618 - 8698762
Alignment:
| Q |
109 |
agtagtgatattaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttaggcatgtttctttaagtggtgacaagtttcatg |
208 |
Q |
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| T |
8698618 |
agtagcgatactaattttatgaaatgttatatttgtaggcgtgcaaatgagtttgattatgaagttagacatgtttctttaactggtcacaagtttcatg |
8698717 |
T |
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| Q |
209 |
tcaacctgcaaagatggtcttgtgactgcaggaaatggctactaa |
253 |
Q |
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| T |
8698718 |
tcaacctgcaaagatggtcttgtgactgcaggaaatggttactaa |
8698762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 8698435 - 8698514
Alignment:
| Q |
18 |
catcagagtgtacttgatggagagatgggaagcaaacaggcagaaagctgcaatgttgaaggatggtgtgttacccaaca |
97 |
Q |
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| T |
8698435 |
catcagagtgtacctgatggagagatgggaagcaaacaggcagaaagctgcaatgttggaggatggtgtgttacccaaca |
8698514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 37101878 - 37101837
Alignment:
| Q |
22 |
agagtgtacttgatggagagatgggaagcaaacaggcagaaa |
63 |
Q |
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| T |
37101878 |
agagtgtacctgatggagagatgggaagcaaataggcagaaa |
37101837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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