View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_6 (Length: 568)
Name: NF9751_low_6
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 219 - 552
Target Start/End: Complemental strand, 13037652 - 13037318
Alignment:
| Q |
219 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcgatgtgtttcttcatttcagtaaactaatt |
317 |
Q |
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| T |
13037652 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttcttcatttcagtaaactaatt |
13037553 |
T |
|
| Q |
318 |
aattaatatttaagaacattgagattttctttttacaaggacaggttcaagccacttatcaaattaggaaatagtttgcattgtttagtaggcattggcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13037552 |
aattaatatttaagaacattgagattttctttttacaaggacaggttcaagccacttatcaaattaggaaatagtttgcattgtttagtaggcattggcc |
13037453 |
T |
|
| Q |
418 |
ctaccacaagcataccaattattaaatggctaagttaatagctataaggcacattcattttttacctaaattttttggatagatttgaataattgaagac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13037452 |
ctaccacaagcataccaattattaaatggctaagttaatagctataaggcacattcattttttacctaaattttttggatagatttgaataattgaagac |
13037353 |
T |
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| Q |
518 |
atctcaatataagtgaccctatgtgctggttgatt |
552 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
13037352 |
atctcaatataagtgaccctatgtgctggttgatt |
13037318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 219 - 552
Target Start/End: Complemental strand, 13107660 - 13107326
Alignment:
| Q |
219 |
ctgtgtggatcaataatg-acagtaaccnnnnnnnttcctattttaagaaaatcgtactctataaatttcgatgtgtttcttcatttcagtaaactaatt |
317 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13107660 |
ctgtgtggatcaataatggacagtaaccaaaaaaattcctattttaagaaaatcctactctataaatttcaatgtgtttcttcatttcagtaaactaatt |
13107561 |
T |
|
| Q |
318 |
aattaatatttaagaacattgagattttctttttacaaggacaggttcaagccacttatcaaattaggaaatagtttgcattgtttagtaggcattggcc |
417 |
Q |
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| T |
13107560 |
aattaatatttaagaacattgagattttctttttacaaggacaggttcaagccacttatcaaattaggaaatagtttgcattgtttagtaggcattggcc |
13107461 |
T |
|
| Q |
418 |
ctaccacaagcataccaattattaaatggctaagttaatagctataaggcacattcattttttacctaaattttttggatagatttgaataattgaagac |
517 |
Q |
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| T |
13107460 |
ctaccacaagcataccaattattaaatggctaagttaatagctataaggcacattcattttttacctaaattttttggatagatttgaataattgaagac |
13107361 |
T |
|
| Q |
518 |
atctcaatataagtgaccctatgtgctggttgatt |
552 |
Q |
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| T |
13107360 |
atctcaatataagtgaccctatgtgctggttgatt |
13107326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13038048 - 13037984
Alignment:
| Q |
7 |
tttggtgttgtagttctctttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
71 |
Q |
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| T |
13038048 |
tttggtgttttaattctctttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
13037984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13108056 - 13107992
Alignment:
| Q |
7 |
tttggtgttgtagttctctttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
71 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13108056 |
tttggtgttttaattctctttcatgaccttctacgaagatttgttccataaaatgagtgttattg |
13107992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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