View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9751_low_60 (Length: 254)
Name: NF9751_low_60
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_60 |
 | |
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| [»] scaffold0436 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
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| [»] scaffold0670 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 23844723 - 23844886
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23844723 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
23844822 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23844823 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatccttctcctc |
23844886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 23210944 - 23210782
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
23210944 |
atattcgtctacttatgtctaactcataattttgtcatattcacatcacatctaaatcttacacccaccattagtttaattttcattctcttcttctttt |
23210845 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcct |
252 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
23210844 |
actccttgtgacacacttcatccttcatcttattcgttcatttaacccacctatccttctcct |
23210782 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 24431627 - 24431464
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24431627 |
atattcgtctacttatgtctaactcataattttgtcatattcacatcatatctaattcttacacccaccattagtttaattttcattctctacatctttt |
24431528 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||||| ||||||||||||| |||||||| |
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|
| T |
24431527 |
actcctagtgacatatttcatccttcatcttatccgttcacttaacccacctatcattctcctc |
24431464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 32410428 - 32410591
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32410428 |
atattcgtctacttatgtctaactcataattttgtcatattcacatcatatctaaatcttacacccaccattagtttaattttcattctctgcatctttt |
32410527 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32410528 |
actcctggtggcacacttcatccttcatcttattcgttcatttaacccacctatccttctcctc |
32410591 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 23845039 - 23844876
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23845039 |
atattcgtctacctatgtctaactcataattttgtcatattcacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
23844940 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
||||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
23844939 |
actcccactgacacacttcatccttcatcttatccgttcatttaacccacctatccttctcctc |
23844876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 18544695 - 18544655
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatt |
130 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18544695 |
atatttgtctacttatgactaactcataattttgtcatatt |
18544655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 249
Target Start/End: Complemental strand, 1034 - 875
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
1034 |
atattcgtctacttatgtctaactcataattttggcatattcacatcatatataaatcttacacccaccattagtttaattttcattctctgcgtctttt |
935 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttct |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
934 |
actcctagtgacacacttcatccttcatcttatccgttcttttaacccacctatccttct |
875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 12056926 - 12057088
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12056926 |
atatttgtctacttatgtctaactcataattttgtcatattcacat-atatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
12057024 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| | ||||| ||||||||| |
|
|
| T |
12057025 |
actcctagtgacacacttcatccttcatcatatccgttcatttaactcgcctatacttctcctc |
12057088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 12344 - 12182
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12344 |
atattcgtctactcatttctaactcataattttgtcatattcacatcatatctaaatcgttcacccaccattagtttagttttcattctctacatctttt |
12245 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcct |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
12244 |
actcctagtgacacacttcatccttcatcttatccgttcatttaacccacctatcattctcct |
12182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 23450193 - 23450356
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
23450193 |
atattcgtctacttatgtctaactcttaattttgtcatattcacgtcatatctaaatcttacacccaccattagtttaattttcattctttgcatttttt |
23450292 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
23450293 |
actcttagtgacatacttcatccttcatcttatccgtccatttaacccacctatccttctcctc |
23450356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 24495306 - 24495469
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
24495306 |
atattcgtctacttatgtctaactcataattttgtcatattcacatcatatttaaatcttacacccaccattagtttgattttcattctcagcatctttt |
24495405 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | | |||| |||| |||||| ||||||||| |
|
|
| T |
24495406 |
actcctagtgacatacttcatccttcatcttatccatgcattaaacctacctatccttctcctc |
24495469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 36869 - 36706
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
36869 |
atattcgtctacttatgtctaactcataattttgtcatattcacatcatatctaaatcttacacccaccattagtttgattttcattctctgcatatttt |
36770 |
T |
|
| Q |
190 |
actcctagtgacacacttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| | | |||| |||| |||||| ||||||||| |
|
|
| T |
36769 |
actcatagtgacatacttcatccttcatcttatccatgcattaaacctacctatccttctcctc |
36706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 16478220 - 16478335
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcatatttacatcatatctaaatcttacacccaccattagtttaattttcattctctacatctttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
16478220 |
atattcgtctacttatgtctaactcataatt--gtcatattaacatcatatctaaatcttacacccaccattagttcaattttcattctctgcatatttt |
16478317 |
T |
|
| Q |
190 |
actcctagtgacacactt |
207 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
16478318 |
actcctagtgacatactt |
16478335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 16481242 - 16481291
Alignment:
| Q |
204 |
acttcatccttcatcttattcgttcatttaacccacctatgcttctcctc |
253 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
16481242 |
acttcatccttcatcttatccgttcatttaacccacctatccttctcctc |
16481291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0670 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0670
Description:
Target: scaffold0670; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 5732 - 5769
Alignment:
| Q |
90 |
atattcgtctacttatgtctaactcataattttgtcat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5732 |
atattcgtctacttatgtctaactcataattttgtcat |
5769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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