View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9751_low_61 (Length: 250)

Name: NF9751_low_61
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9751_low_61
NF9751_low_61
[»] chr4 (16 HSPs)
chr4 (13-240)||(2516329-2516549)
chr4 (5-93)||(11306531-11306621)
chr4 (11-93)||(4416527-4416611)
chr4 (11-93)||(49984076-49984160)
chr4 (5-93)||(45505337-45505427)
chr4 (31-93)||(45170699-45170761)
chr4 (5-93)||(18414767-18414857)
chr4 (14-93)||(18414964-18415045)
chr4 (11-93)||(48845763-48845847)
chr4 (5-93)||(4416755-4416845)
chr4 (14-94)||(36752913-36752995)
chr4 (31-93)||(20870900-20870962)
chr4 (35-93)||(37724702-37724760)
chr4 (5-90)||(4592636-4592723)
chr4 (14-83)||(46397360-46397431)
chr4 (5-90)||(48845994-48846081)
[»] scaffold0548 (1 HSPs)
scaffold0548 (5-93)||(3309-3399)
[»] chr5 (2 HSPs)
chr5 (5-93)||(16642795-16642885)
chr5 (28-93)||(33992405-33992470)
[»] chr7 (4 HSPs)
chr7 (31-93)||(36469812-36469874)
chr7 (24-93)||(7460848-7460917)
chr7 (5-90)||(22566348-22566433)
chr7 (24-93)||(24188176-24188245)
[»] chr1 (14 HSPs)
chr1 (13-91)||(31872879-31872959)
chr1 (5-93)||(3073023-3073113)
chr1 (24-93)||(42604696-42604765)
chr1 (31-93)||(143091-143153)
chr1 (24-93)||(18519596-18519665)
chr1 (28-93)||(34518232-34518297)
chr1 (5-91)||(37245682-37245770)
chr1 (24-93)||(42604907-42604976)
chr1 (12-93)||(3075198-3075281)
chr1 (5-93)||(22792555-22792645)
chr1 (31-93)||(31872752-31872814)
chr1 (53-93)||(14420057-14420097)
chr1 (12-93)||(19987386-19987469)
chr1 (31-91)||(35795386-35795446)
[»] chr2 (9 HSPs)
chr2 (12-93)||(29526871-29526954)
chr2 (5-93)||(3217330-3217420)
chr2 (24-93)||(44995337-44995406)
chr2 (5-93)||(3221104-3221194)
chr2 (14-93)||(27956779-27956860)
chr2 (12-93)||(13490226-13490309)
chr2 (8-90)||(13490454-13490537)
chr2 (21-93)||(1352895-1352967)
chr2 (5-93)||(13140335-13140428)
[»] chr8 (10 HSPs)
chr8 (11-93)||(4623120-4623204)
chr8 (14-93)||(34439501-34439582)
chr8 (38-90)||(16049760-16049812)
chr8 (12-93)||(25879619-25879702)
chr8 (21-93)||(34687817-34687889)
chr8 (5-80)||(9710261-9710338)
chr8 (11-93)||(7535531-7535615)
chr8 (24-93)||(18429479-18429548)
chr8 (24-93)||(23871164-23871233)
chr8 (25-93)||(34439289-34439357)
[»] chr6 (6 HSPs)
chr6 (24-93)||(10567739-10567808)
chr6 (24-93)||(22793574-22793643)
chr6 (21-93)||(32629126-32629198)
chr6 (5-93)||(10567508-10567598)
chr6 (5-93)||(34829833-34829923)
chr6 (45-93)||(19279046-19279094)
[»] chr3 (3 HSPs)
chr3 (31-92)||(54341276-54341337)
chr3 (5-90)||(33419822-33419909)
chr3 (31-93)||(33419613-33419675)
[»] scaffold0056 (2 HSPs)
scaffold0056 (5-93)||(62771-62861)
scaffold0056 (14-93)||(63001-63082)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 2516549 - 2516329
Alignment:
Q  13 tatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagttgtgatgagtatgaattg 110  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  2516549 tatgttttaaaagtttcaaattggtcccttacgatttaatggtttcatgttggtccaaaatgttactcacgttggaataagttgtgatgagtgtgaattg 2516450  T
Q  111 ttcatatactggtgttgttgttttttctgctaaaattgagcaagttatggattgatttagatgttgatatgtttttcttcgttgttttggatcggtttta 210  Q
    ||||||||||||      |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||||       
T  2516449 ttcatatactgg------tgttctttctgctaaaattgagcaagttatggattgatttagatgttgatctgtttttcttcgtcattctggatcggtt--- 2516359  T
Q  211 tttcttctttattttcatccaattcctttg 240  Q
    ||| ||||| ||||||||||||||||||||    
T  2516358 ttttttcttgattttcatccaattcctttg 2516329  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 11306621 - 11306531
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||||||||||||  |||||| ||||||||||||| |||||  |||||| ||||||| |||| ||||||||| ||||||||||||    
T  11306621 tggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataagtt 11306531  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 4416527 - 4416611
Alignment:
Q  11 cttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||  |||||| ||||||| ||||| |||||  |||||| ||||||| |||| ||||||||||||||||||||||    
T  4416527 cttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagtt 4416611  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 49984160 - 49984076
Alignment:
Q  11 cttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||  |||||| ||||||||||| | ||||| | ||||| ||||||| |||| ||||||||||||||||||||||    
T  49984160 cttatgttttaaaagtttcaagttggtcccttatgttttaaagttttcaagttggtccaaaacgttactcacgttggaataagtt 49984076  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 45505427 - 45505337
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||||||||||||  |||||| ||||||||||||| |||||  |||||| ||||||| |||| ||||||||| || |||||||||    
T  45505427 tggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattagaataagtt 45505337  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 45170699 - 45170761
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||| | |||||  |||||| ||||||| |||||||||||||||||||||||||||    
T  45170699 ttggtcccttaggttttaaaagtttcaagttggtccaaaatgttactcacgttggaataagtt 45170761  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 18414767 - 18414857
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||||||||||||  |||||| ||||||||||||  |||||   ||||| ||||||  |||| ||||||||||||||||||||||    
T  18414767 tggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaaatttcaagttggttcaaaacgttactcacgttggaataagtt 18414857  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 18415045 - 18414964
Alignment:
Q  14 atgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||  |||||| |||||||||| || |||||  |||||| ||||||| |||| ||||||||||||| ||||||||    
T  18415045 atgttttaaaagtttcaagttggtcccttgcgttttaaaagtttcaagttggtccaaaacgttactcacgttgaaataagtt 18414964  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 48845763 - 48845847
Alignment:
Q  11 cttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||  |||||| ||||||||||||| |||||   ||| | ||||||| |||||||||||||| ||| ||||||||    
T  48845763 cttatgttttaaaagtttcaagttggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacattgaaataagtt 48845847  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 4416845 - 4416755
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||||||||||||  ||| || ||||||||||||  |||||  |||| | ||||||| |||| ||||||||| ||||||||||||    
T  4416845 tggtcccttatgttttaaaaattttaagttggtcccttacattttaaaagttttaagttggtccaaaacgttactcacattggaataagtt 4416755  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 36752913 - 36752995
Alignment:
Q  14 atgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagttg 94  Q
    ||||||||||  |||||| |||||||||| || |||||   ||||| ||||||| |||| ||||| |||||||||||||||||    
T  36752913 atgttttaaaagtttcaagttggtcccttgcgttttaaaaatttcaagttggtccaaaacgttacccacgttggaataagttg 36752995  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 20870900 - 20870962
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||| |||||  |||||| ||| ||| |||| ||||||||| ||||||||||||    
T  20870900 ttggtcccttacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagtt 20870962  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 37724760 - 37724702
Alignment:
Q  35 tcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||| | |||||  |||||| ||||||| |||| ||||||||||||||||||||||    
T  37724760 tcccttaggttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagtt 37724702  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 4592723 - 4592636
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataa 90  Q
    |||||||||||||||||||  ||| || ||||||||||| | |||||  |||||| ||||||  |||| ||||||||| || ||||||    
T  4592723 tggtctcttatgttttaaaagttttaagttggtcccttatgttttaacagtttcaagttggttcaaaacgttactcacattagaataa 4592636  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 46397360 - 46397431
Alignment:
Q  14 atgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgtt 83  Q
    ||||||||||  |||||| ||||||||||||| |||||  |||| | ||||||| |||| ||||||||||||    
T  46397360 atgttttaaaagtttcaagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactcacgtt 46397431  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 48846081 - 48845994
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataa 90  Q
    ||||| |||||||||||||  ||| ||  |||| ||||| | |||||  |||||| ||||| |||||| |||||||||||||||||||    
T  48846081 tggtcccttatgttttaaaagttttaagatggtgccttatgttttaaaagtttcaagttggactaaaacgttactcacgttggaataa 48845994  T

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Target: scaffold0548 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 3399 - 3309
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||||||||||||  |||||| ||||||||||||| |||||  |||||| ||||||| |||| ||||||||| ||||||||||||    
T  3399 tggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataagtt 3309  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 16642795 - 16642885
Alignment:
Q  5 tggtctcttatgttttaaat--ttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| ||||||||||||||  ||||| |||||| ||| || ||||| ||||||| |||||||||||| ||||| ||||||||||||||||    
T  16642795 tggtcccttatgttttaaatatttcaagttggtctcttgcgttttaaaggtttcaagttggtctaaaacgttacgcacgttggaataagtt 16642885  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 33992405 - 33992470
Alignment:
Q  28 aaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||||| |||||  |||||| ||||||  |||| |||| |||||||| ||||||||    
T  33992405 aaattggtcccttacgttttaaaagtttcaagttggttcaaaacgttattcacgttgaaataagtt 33992470  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 36469874 - 36469812
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||| |||||  |||||| ||||||| |||||||||||||||||||||||||||    
T  36469874 ttggtcccttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataagtt 36469812  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 7460917 - 7460848
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| |||||| |||| | |||||  ||||||  ||||||||||| ||||||||||||||||||||||    
T  7460917 tttcaagttggtcacttatgttttaaaagtttcaaattggtctaaaacgttactcacgttggaataagtt 7460848  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 22566348 - 22566433
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataa 90  Q
    ||||| |||||||||||||  |||||| ||||||||||||| |||||  |||||  ||||||| |||| ||||||||||||| |||||    
T  22566348 tggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttc--gttggtccaaaacgttactcacgttgaaataa 22566433  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 24188245 - 24188176
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| ||||||||||| | |||||  |||||| ||||||  |||||||||||||||| ||||||||||    
T  24188245 tttcaagttggtcccttatgttttaagagtttcaagttggttcaaaatgttactcacgtcggaataagtt 24188176  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 31872959 - 31872879
Alignment:
Q  13 tatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataag 91  Q
    |||||||||||  |||||| ||||||||||||| |||||  |||||| ||||||| |||| ||||||||||||||||||||    
T  31872959 tatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataag 31872879  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 3073023 - 3073113
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| ||| |||||||||  ||| || |||||| |||||| |||||  |||||| ||||||||||||||||| |||||||||||||||||    
T  3073023 tggtcccttgtgttttaaaagttttaagttggtctcttacgttttaaaagtttcaagttggtctaaaatgttattcacgttggaataagtt 3073113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 42604696 - 42604765
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| ||||||||||  | |||||  |||||| |||||||||||| ||||||||||||||||||||||    
T  42604696 tttcaagttggtccctttagttttaaaagtttcaagttggtctaaaacgttactcacgttggaataagtt 42604765  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 143153 - 143091
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||| |||||  |||||| ||||||| |||| ||||||||||||| ||||||||    
T  143153 ttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttgcaataagtt 143091  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 18519665 - 18519596
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| |||||| | |||| |||||  |||||| |||| ||||||| ||||||||||||||||||||||    
T  18519665 tttcaagttggtctcatacgttttaaaagtttcaagttgatctaaaacgttactcacgttggaataagtt 18519596  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 34518297 - 34518232
Alignment:
Q  28 aaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||||| |||||   ||||| ||||||| |||| |||||||||||| |||||||||    
T  34518297 aaattggtcccttacgttttaaaaatttcaagttggtccaaaacgttactcacgttagaataagtt 34518232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 37245682 - 37245770
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataag 91  Q
    ||||||||||| |||||||  |||||| ||| ||||||||  |||||  |||| | ||||||| |||| ||||||||||||||||||||    
T  37245682 tggtctcttatattttaaaagtttcaagttgatcccttacattttaaaagttttaagttggtccaaaacgttactcacgttggaataag 37245770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 42604976 - 42604907
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| ||||||||||||| ||| |  |||||||||||||| |||| ||||||||| || |||||||||    
T  42604976 tttcaagttggtcccttacgtttttaaagtttcatgttggtcaaaaacgttactcacatttgaataagtt 42604907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 3075281 - 3075198
Alignment:
Q  12 ttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||  |||||| ||||||| ||||| |||||  |||||| ||| ||| |||| ||||||||| ||||||||||||    
T  3075281 ttatgttttaaaagtttcaagttggtccattacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagtt 3075198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 22792645 - 22792555
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||| ||||||||  ||| || ||||||||||||| || || ||||||| ||| ||| |||| ||||||||| ||||||||||||    
T  22792645 tggtcccttaagttttaaaagttttaagttggtcccttacgtttgaaaggtttcaagttagtccaaaacgttactcacattggaataagtt 22792555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 31872752 - 31872814
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||| |||||  |||||| ||||||| |||| ||||||||| ||| ||||||||    
T  31872752 ttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagtt 31872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 14420097 - 14420057
Alignment:
Q  53 tttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| ||||||| |||| ||||||||||||||||||||||    
T  14420097 tttcaagttggtccaaaacgttactcacgttggaataagtt 14420057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 19987386 - 19987469
Alignment:
Q  12 ttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||  ||| || ||||||||||| | |||||  |||||| |||| || |||| ||||||||| ||||||||||||    
T  19987386 ttatgttttaaaagttttaagttggtcccttaagttttaaaagtttcaagttgatccaaaacgttactcacattggaataagtt 19987469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 35795386 - 35795446
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataag 91  Q
    ||||||||||||| ||||| ||||||| | ||||| |||| ||||| |||||| |||||||    
T  35795386 ttggtcccttacgttttaaaggtttcaaggtggtccaaaacgttacccacgtttgaataag 35795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 29526954 - 29526871
Alignment:
Q  12 ttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||  ||| || ||||||||||||| |||||  |||||| ||||||| |||| ||||||||||||||||||||||    
T  29526954 ttatgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagtt 29526871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 3217330 - 3217420
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||||||||||||  |||||| ||||||| ||| | |||||   ||||| |||||||||||| ||||||||||||||||||||||    
T  3217330 tggtcccttatgttttaaaggtttcaagttggtccattatgttttaaaattttcaagttggtctaaaacgttactcacgttggaataagtt 3217420  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 44995406 - 44995337
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| ||||||||||||| |||||  || ||| ||||||| |||| ||||||||||||||||||||||    
T  44995406 tttcaagttggtcccttacgttttaaaagtatcaagttggtccaaaacgttactcacgttggaataagtt 44995337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 3221194 - 3221104
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||||||||||||  |||||| ||||||| ||| | |||||   ||||| |||||||||||| |||||||| |||||||||||||    
T  3221194 tggtcccttatgttttaaaagtttcaagttggtccattatgttttaaaattttcaagttggtctaaaacgttactcatgttggaataagtt 3221104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 27956779 - 27956860
Alignment:
Q  14 atgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||  ||| |||||||||||||||| |||||  |||||| ||||||| ||||  |||| ||||||||||||||||    
T  27956779 atgttttaaaagttttaaattggtcccttacgttttaaaagtttcaagttggtccaaaacattacccacgttggaataagtt 27956860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 13490226 - 13490309
Alignment:
Q  12 ttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||  ||| || |||||| |||||| |||||  |||| | ||||||| |||| ||||||||||||||||||||||    
T  13490226 ttatgttttaaaagttttaagttggtctcttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataagtt 13490309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 13490537 - 13490454
Alignment:
Q  8 tctcttatgttttaaat--ttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataa 90  Q
    ||||||||||||||||   || || ||||||||||||| |||||  |||||| ||||||| ||| |||||||||| |||||||||    
T  13490537 tctcttatgttttaaaagatttaagttggtcccttacgctttaaaagtttcaagttggtccaaa-tgttactcacattggaataa 13490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 1352895 - 1352967
Alignment:
Q  21 aaatttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| || |||||| |||||  |||||  |||| | ||||||||||||||||| |||||||| ||||||||    
T  1352895 aaattttaagttggtctcttacattttaaaagttttaagttggtctaaaatgttattcacgttgaaataagtt 1352967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 13140335 - 13140428
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgtta---ctcacgttggaataagtt 93  Q
    |||||| ||||||||||||  ||| || |||||| |||||| ||||| ||||||| ||||||| || ||||||   |||| |||||||||||||    
T  13140335 tggtcttttatgttttaaaagttttaagttggtcacttacgttttaaaggtttcaagttggtccaacatgttattactcatgttggaataagtt 13140428  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 4623120 - 4623204
Alignment:
Q  11 cttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||  ||| || |||||| |||||| ||||| ||||||| ||||||| |||||||||||||| ||| ||||||||    
T  4623120 cttatgttttaaaagttttaagttggtctcttacgttttaaaggtttcaagttggtccaaaatgttactcacattgaaataagtt 4623204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 34439582 - 34439501
Alignment:
Q  14 atgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||  |||||| ||||||||||||| |||||  |||| | ||||||| |||| ||||||||||||||| ||||||    
T  34439582 atgttttaaaagtttcaagttggtcccttacgttttaaaagtttaaagttggtccaaaacgttactcacgttggattaagtt 34439501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 16049812 - 16049760
Alignment:
Q  38 cttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataa 90  Q
    |||||| |||||  |||||| ||||||| ||||||||||||||||||||||||    
T  16049812 cttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataa 16049760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 25879619 - 25879702
Alignment:
Q  12 ttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||  ||| ||||||||| |||||| |||||| |||||| ||| ||  |||| ||||| ||||||||||||||||    
T  25879619 ttatgttttaaaagttttaaattggtcacttacgttttaatagtttcaagttagttcaaaacgttacccacgttggaataagtt 25879702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 34687817 - 34687889
Alignment:
Q  21 aaatttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||| ||||||||||| | |||||  |||||| ||||||| |||| ||||||||| || |||||||||    
T  34687817 aaatttcaagttggtcccttatgttttaaaagtttcaagttggtccaaaacgttactcactttagaataagtt 34687889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 9710261 - 9710338
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcac 80  Q
    ||||| |||||||||||||  |||||| ||||||||||||  |||||  |||||| ||||||| |||| |||||||||    
T  9710261 tggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaagtttcaagttggtccaaaacgttactcac 9710338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 7535615 - 7535531
Alignment:
Q  11 cttatgttttaaat--ttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||   ||||| ||||||||||||  ||||  ||||| | ||||||| |||| ||||||||||||| ||||||||    
T  7535615 cttatgttttaaaagattcaagttggtcccttacattttacaggttttaagttggtccaaaacgttactcacgttgaaataagtt 7535531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 18429479 - 18429548
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| |||||||||||   |||||  |||||| ||||||| ||||| ||||||||||| |||||||||    
T  18429479 tttcaagttggtcccttatattttaaaagtttcaagttggtccaaaatattactcacgttagaataagtt 18429548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 23871164 - 23871233
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| ||||||||| |   ||||| ||||||| ||||||| |||||||||||| ||||| ||||||||    
T  23871164 tttcaagttggtccctcatattttaaaggtttcaagttggtccaaaatgttactcgcgttgaaataagtt 23871233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 34439289 - 34439357
Alignment:
Q  25 ttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| ||||||||||||| |||||  | |||| ||||||| |||| |||| |||||||| ||||||||    
T  34439289 ttcaagttggtcccttacgttttaaaagattcaagttggtccaaaacgttattcacgttgcaataagtt 34439357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 10567808 - 10567739
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| ||||||||||||| |||||  |||||| ||||||| ||||  |||||||||||||||||||||    
T  10567808 tttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacattactcacgttggaataagtt 10567739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 22793643 - 22793574
Alignment:
Q  24 tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| ||||||||||||| |||||  |||||| ||| ||| |||||||||||||  ||||||||||||    
T  22793643 tttcaagttggtcccttacgttttaaaagtttcaagtttgtccaaaatgttactcatattggaataagtt 22793574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 32629126 - 32629198
Alignment:
Q  21 aaatttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||| || ||||||||||||  ||||| ||||||| ||| ||| |||| ||||||||||||| ||||||||    
T  32629126 aaattttaagttggtcccttacattttaaaggtttcaagttagtccaaaacgttactcacgttgaaataagtt 32629198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 10567508 - 10567598
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| |||| ||||||||  |||||| ||||||||||||| |||||  |||||| ||||||  |||| ||||||||| ||| ||||||||    
T  10567508 tggtcccttacgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggttcaaaacgttactcacattgaaataagtt 10567598  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 34829923 - 34829833
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    |||||||||||||||||||  |||||  ||||||||||||| ||||| ||||||| ||||||  |||| ||||| ||  ||| ||||||||    
T  34829923 tggtctcttatgttttaaaagtttcatgttggtcccttacgttttaaaggtttcaagttggttcaaaacgttacccatattgaaataagtt 34829833  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 19279046 - 19279094
Alignment:
Q  45 tttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||| ||||| | |||||| ||||| ||||||||||||||||||||||    
T  19279046 tttaaaggttttaagttggtataaaacgttactcacgttggaataagtt 19279094  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 54341276 - 54341337
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagt 92  Q
    ||||||||||||| |||||  |||||| ||||||| |||| |||||||||||||||||||||    
T  54341276 ttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagt 54341337  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 33419909 - 33419822
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataa 90  Q
    ||||| |||||||||||||  ||||||  |||||||||||| |||||  |||| | ||||| |||||| |||||||||||||||||||    
T  33419909 tggtcccttatgttttaaaagtttcaagatggtcccttacgttttaaaagttttaagttggactaaaacgttactcacgttggaataa 33419822  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 33419613 - 33419675
Alignment:
Q  31 ttggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||||| |||||  |||||| ||||||| |||| ||||||||| ||| ||||||||    
T  33419613 ttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagtt 33419675  T

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Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 62771 - 62861
Alignment:
Q  5 tggtctcttatgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||| |||||||||||  |||||| ||  ||||||||| |||||  |||| | ||||||| |||| ||||||||||||||||||||||    
T  62771 tggtctcgtatgttttaaaagtttcaagttaatcccttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataagtt 62861  T

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Target: scaffold0056; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 63082 - 63001
Alignment:
Q  14 atgttttaaa--tttcaaattggtcccttacgatttaatggtttcatgttggtctaaaatgttactcacgttggaataagtt 93  Q
    ||||||||||  |||||| ||||||||||||  |||||  |||||| ||||||| |||| ||||||||| ||||||||||||    
T  63082 atgttttaaaagtttcaagttggtcccttacattttaaaagtttcaggttggtccaaaacgttactcactttggaataagtt 63001  T

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