View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9751_low_62 (Length: 250)
Name: NF9751_low_62
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_62 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 766559 - 766319
Alignment:
| Q |
1 |
gaagcacaaaaaattgacacggaccactaacactaacacatacacatgaatactaatttttgaaataaaataatcgattgaatgcaatcatatcatcgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
766559 |
gaagcacaaaaaattgacacggaccactaacac------atacacatgaatactaatttttaaaataaaataatcgattgaatgcaatcatatcttcgtg |
766466 |
T |
|
| Q |
101 |
t--------tgaaagacacccaacacatcttcaatctagaatttagatactacctagattgttacaaactagtacaataaaaatggaacattgtacttgg |
192 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
766465 |
tgtgtttcgtgaaagacacccaacacatcttcaatctaaaatttagatactacctagattgttacaaacaagtagaataaaaatggaacattgtacttgg |
766366 |
T |
|
| Q |
193 |
ttatagatttatgaatggaaataagaaaattaactcaccgttttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
766365 |
ttatagatttatgaatggaaataagaaaattaactcaccgttttcat |
766319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University