View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_64 (Length: 250)
Name: NF9751_low_64
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 29842159 - 29842405
Alignment:
| Q |
1 |
aaaatccgtattcatagcggttgatgaatagttgtacattcaatggaatgcgttcgttattgtggccttcgttatgtgttgagtctgagtcatatttacc |
100 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29842159 |
aaaatccgtattcatagccattgatgaacagttgtacattcaatggaatgagttcgttattgtggccttcgttatgtgttgagtctgagtcatatttacc |
29842258 |
T |
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| Q |
101 |
acacatcaatttacaaatgacgaagagtgttatgatggggagcttgctacgaaaccaaaaggatatcgatggccccctattttggtgctcaaaccactcc |
200 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29842259 |
ccacatcaatttacaaacgacgaagagtgttatggtggggagcttgctacgaaaccaaaaggatatcgatggccccctattttggtgctcaaaccactcc |
29842358 |
T |
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| Q |
201 |
agaaaccttgtacttcttgtaaaaataaactcagcacctccatactc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29842359 |
ggaaaccttgtacttcttgtaaaaataaactcagcacctccatactc |
29842405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 29829303 - 29829060
Alignment:
| Q |
1 |
aaaatccgtattcatagcggttgatgaatagttgtacattcaatggaatgcgttcgttattgtggccttcgttatgtgttgagtctgagtcatatttacc |
100 |
Q |
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|||||||||||||||||| |||||||| ||||| ||||||||||||||| |||| |||| |||||||| ||||||||||||||||| ||| | |||| |
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| T |
29829303 |
aaaatccgtattcatagccattgatgaacagttggacattcaatggaatgagttcattatagtggccttggttatgtgttgagtctgcgtcgt---tacc |
29829207 |
T |
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| Q |
101 |
acacatcaatttacaaatgacgaagagtgttatgatggggagcttgctacgaaaccaaaaggatatcgatggccccctattttggtgctcaaaccactcc |
200 |
Q |
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||||| ||||||||| |||||||| |||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
29829206 |
ccacattgatttacaaacaacgaagagggttatggtggggagcttgttacgaaaccaaaaagatattgatggccccctattttggtgctcaaaccactct |
29829107 |
T |
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| Q |
201 |
agaaaccttgtacttcttgtaaaaataaactcagcacctccatactc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29829106 |
ggaaaccttgtacttcttgtaaaaataaactcagcacctccatactc |
29829060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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