View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_69 (Length: 248)
Name: NF9751_low_69
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 20597803 - 20598034
Alignment:
| Q |
1 |
ttcgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagtt |
100 |
Q |
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| T |
20597803 |
ttcgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagtt |
20597902 |
T |
|
| Q |
101 |
tatggcaaaggactgagtacactaatcttcagccaccacccat-nnnnnnnncaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattg |
199 |
Q |
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| T |
20597903 |
tatggcaaaggactgagtacactgatcttcagccaccacccataaaaaaaaacaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattg |
20598002 |
T |
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| Q |
200 |
ttggacaacagtcagatgaaaagggcaagatg |
231 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
20598003 |
ttggacaacactcagatgaaaagggcaagatg |
20598034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8698804 - 8699033
Alignment:
| Q |
1 |
ttcgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttacagtagttccatttatccagctaatggtcaaagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
8698804 |
ttcgacatgaacatatttgactttgttccagatatcttcatgaaggacaaatatgtagcatgttactctagttccatttatccggctaatggtcaaagtt |
8698903 |
T |
|
| Q |
101 |
tatggcaaaggactgagtacactaatcttcagccaccacccatnnnnnnnncaacctggtagaccaaaaaagagaagaaacaaggatgccaatgaattgt |
200 |
Q |
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| T |
8698904 |
tatggcaaaggactgagtacactgatcttcagccaccacccat-caaaaaacaacctggtagaccaaaaaagagaagaaacaaggatgctaatgaattgt |
8699002 |
T |
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| Q |
201 |
tggacaacagtcagatgaaaagggcaagatg |
231 |
Q |
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| T |
8699003 |
tggacaacactcagatgaaaagggcaagatg |
8699033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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