View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_7 (Length: 548)
Name: NF9751_low_7
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 263 - 423
Target Start/End: Original strand, 22161621 - 22161781
Alignment:
| Q |
263 |
ttgcaacagattagtaaaagtagaactaatttatctcctcaataacaggtaacttactatgtaagtttagcaggtgaagttgcttttaaaactgttcttc |
362 |
Q |
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| T |
22161621 |
ttgcaacagattagtaaaagtagaactaatttatcttcttcataacaggtaacttactatgtaagtttagcaggtgaagttgcttttaaaactgttcttc |
22161720 |
T |
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| Q |
363 |
aagagaagagtacagaagttatgtaaatatttgcagttgatgatccataatattatttcat |
423 |
Q |
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| T |
22161721 |
aagagaagagtacagaagttatgtaattatttgcagttgatgatccataatattatttcat |
22161781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 22161504 - 22161623
Alignment:
| Q |
78 |
tttgttcttgttttagagatttggctaatggattccttcttcaccaagtcagctcaatgcaaattgtgagtagacaactaaatccaattatgattcatga |
177 |
Q |
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| T |
22161504 |
tttgttcttgttttagagaattggctaatggattccttcttcatcaagtcagctcaacgcaaattgtgagtag----cgaaatccaattatgattcatga |
22161599 |
T |
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| Q |
178 |
tttttctgaaaattgttaaaaattg |
202 |
Q |
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| T |
22161600 |
-ttttctgaaaattgttaaaaattg |
22161623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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